Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1314 145 5e-30 seq1038 132 3e-26 seq1181 129 4e-25 seq892 111 1e-19 >seq1314 Length=139336 Score = 145 bits (160), Expect = 5e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| ||||| ||||| || || || || |||| || |||||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||| ||| |||||| | || | | | || || |||| Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||||| |||||| |||| || | ||| | ||| || Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| ||||||||||| ||||| | |||||| || ||||||| ||| || Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq1038 Length=46086 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||||||||||| || || || || |||| || |||||||| Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | |||||||||| ||| || ||| | || || | | || || ||| Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||| ||| |||||| |||| || | ||| | ||||||| Sbjct 43949 ATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACG 43890 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||||| ||||| ||||| || || | ||||| |||||||||| ||| ||| Sbjct 43889 TCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTT 43839 >seq1181 Length=100449 Score = 129 bits (142), Expect = 4e-25 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| ||||||||||| || || || ||||||| || |||||||| Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| |||| ||| || || |||| | | | || || ||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| |||||||| ||| ||| |||| || | |||| || || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 ||||| || || ||||||||||| | ||||| || ||||||| ||| ||| ||||| Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTT--TTTAAAT 75144 Query 15190 TTTTT 15194 ||||| Sbjct 75145 TTTTT 75149 >seq892 Length=79579 Score = 111 bits (122), Expect = 1e-19 Identities = 174/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 47353 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47412 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||| ||| || ||| | || | | | || || ||| Sbjct 47413 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47472 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| | ||||| ||| || |||| |||| ||| | ||| || Sbjct 47473 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47532 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTGAAATAAA 15188 ||||| || || ||||| || || | ||||| || || |||| || ||||| | | | Sbjct 47533 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTT--ATTTAT 47590 Query 15189 TTTTTTA 15195 ||||||| Sbjct 47591 TTTTTTA 47597 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 46897 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 46956 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||| ||| || ||| | || | | | || || ||| Sbjct 46957 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47016 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || | ||||| ||| ||| |||| |||| ||| | ||| || Sbjct 47017 ATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACA 47076 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 47077 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACATA 47124 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 47125 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47184 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||| ||| || ||| | || | | | || || ||| Sbjct 47185 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47244 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || | ||||| ||| || |||| |||| ||| | ||| || Sbjct 47245 ATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47304 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 47305 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATA 47352 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | |||||| |||||||| || || || ||||||| || ||||| || Sbjct 46669 CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAA 46728 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||| ||| || ||| | || | | | || || ||| Sbjct 46729 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 46788 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| | ||||| ||| || |||| |||| ||| | ||| || Sbjct 46789 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 46848 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 46849 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACATA 46896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383214522845