Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1154 343 2e-89 seq703 165 1e-35 seq861 138 1e-27 seq1353 125 9e-24 >seq1154 Length=79492 Score = 343 bits (380), Expect = 2e-89 Identities = 1080/1649 (65%), Gaps = 37/1649 (2%) Strand=Plus/Minus Query 6517 ATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTC 6576 |||| ||||||||| | | |||||||| |||| ||||| | | |||||||| Sbjct 32481 ATAAGTGTAGTTTTCTAAGCTGTTCTTCGCATCGATTTTTTTTTTGATTTATTCATCTTA 32422 Query 6577 ATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCC 6636 | ||| || | ||| || |||| |||| | ||||| ||||| || | ||| || Sbjct 32421 AGATTTGTATTATTCGGCTTCTTTTACCAATCTATCAATATCTTCAGGAGAAAGTCTTCC 32362 Query 6637 CTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTAC 6696 |||| ||| ||||| || || || | | ||| | || ||||| || | || Sbjct 32361 TTTATTATTTGTAATGGTGATTTTATTAGTCTTAGAAGTAGCTTTATCAGTTGCTGTGAC 32302 Query 6697 ATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGG 6756 ||||||||||| || |||||| |||||| || | |||| || ||| || || Sbjct 32301 GTTCAAAATACCGTTCTCATCAATATCGAAGGAGACTTCGATTTAAGGAACACCTCTAGG 32242 Query 6757 TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTT 6816 || | | ||||| ||| | ||| |||| | |||| |||||| | | | || Sbjct 32241 GGCAGGAGCGATACCTTCTAAGTTGAATTTACCTAATAAATGGTTATCTTTAGT-TAATT 32183 Query 6817 A-CGTTCACCTTCATAGACTTTAATT-GT-CACCGCAGGTTGATTATCTTGTGCCGTTGA 6873 | | ||||||||| | |||| ||| || ||||| |||| ||||| || | Sbjct 32182 ATCTTTCACCTTCGAATACTTAAATGAGTACACCG--GGTTAGTTATCAGCATAAGTGGT 32125 Query 6874 GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 ||| |||| | ||| |||| ||||| || || ||||| || |||| ||||| | Sbjct 32124 GAAAATTTATGATTTTTTAGTAGGAATAGTAGTGTTTCTTGGGATAAGAACTGTCATGAC 32065 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 ||| |||||| | ||| | || || || | || ||||| | ||| | |||| Sbjct 32064 TTAACCAGCAGTTTCAATTCCCATTGAAAGTGGAGCGACATCCAATAATAAGACATCTTA 32005 Query 6994 AACAGATTCGTTCCCTTCACCC-GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGA 7052 |||| ||| | | || || ||||| || ||||||| ||| | || || || || | Sbjct 32004 GACAGTTTC-TGAAGTACAACCAGTTAAAATAGCGGCTTAGACAGCTGCTCCATAAGCTA 31946 Query 7053 CCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACA 7112 | || ||||| || ||||| | | |||| ||||||| ||||| || | || | | || Sbjct 31945 CAGCTTCATCAGGATTAATAGATCTATTAGGTTCTTTTCCGTTGAAGAATTCTTAGATCA 31886 Query 7113 TTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCG 7172 || |||||| || |||| ||| ||||| || || || |||| |||| | | ||| Sbjct 31885 TTGAAATAATTTTGGGAATTCTTGTAGATCCTCCAACTAAGACGACTTCA-TGAATTTA- 31828 Query 7173 ATTTATCGATCTTT--GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAA 7230 |||| | || || || || ||| |||||| || || ||||||| ||| Sbjct 31827 ATTTTTAGAAATTCCGGAATCCTTGAGTACTTTTTCAACTGGAGGGATACATTCTTTGAA 31768 Query 7231 CAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA-GAAATCAACGC 7289 | | ||| | ||| || || | | | ||| | | | |||||| | | Sbjct 31767 TTAAGAAAGACATAATTCTTCGAATTTAGGTCTAGAAATAT-TCAACATGAAATCTTCAC 31709 Query 7290 CGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTG 7349 || | | ||| | |||||| || | || || | || || | ||| || | Sbjct 31708 TTTCTGCAAGTGCATCGACTTCAATAGTAGCTTAAGCTGAAGATGAGAGAATTCTTTTCG 31649 Query 7350 CGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT-TTC 7408 | | || || |||| | | | | ||| | |||||| | |||||| ||| Sbjct 31648 CTCTTTCGCATTAAGTTCTGAGTCTTCTCATGGCTCTTGGGTTATCTCTAATATCGATTC 31589 Query 7409 TTATGTTTACGTTTAA--ACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 | | ||| ||||| | || ||| | | | | | ||| | ||||||||||| Sbjct 31588 CTTTCTTT---TTTAAGAATTCAGCAGCGCAATATTATACGAGGTTATTATCGAAATCTT 31532 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | || || || || ||||| || || || ||||||||||| || ||||| | || | Sbjct 31531 CTCCTCCTAAATGAGTATCTCCTGCAGTGGCTTTGACTTCGAAAATACCGTCGTCTAAAG 31472 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 |||| || || ||||| || ||||||||||| | || || || || ||||| | || Sbjct 31471 TTAATAAGGAGACATCGAAAGTACCACCACCTAAATCGAAGATAAGGACGTTTCTTTCAC 31412 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | | | || ||||| | |||||| || || || || || || |||||||| ||||| | Sbjct 31411 CTTTTCCTTTTTTATCTAAACCGTAAGCTATGGCAGCTGCGGTGGGTTCATTGATAATTC 31352 Query 7647 -GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 ||||| ||| | || ||||| | | |||||||| || |||| || || || || Sbjct 31351 TTAAGAC-GTTTAAACCGGCAATTGAACCGGCATCTTTAGTGGCTTATCTTTAGGAGTCA 31293 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA---- 7761 || || ||||| ||||| || | ||| || | | |||| || |||| || Sbjct 31292 TTGAAATAGGCAGGGACTGTAATGACTGCATTTTTAACTTATTT----GGATAAGAAAGC 31237 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 ||| || | ||| ||||||| |||||||| ||||| || |||||||| || | Sbjct 31236 TTCGGCAACTTCTCTCATTTTAACGAGAACCATAGATGAGATTTCTTCAGCGTGGAATTT 31177 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 ||| |||| || ||| | | | ||||| | |||||||| ||| |||||| ||| Sbjct 31176 TTTGATTTCTCCCTTATATTTTATGACAATCTTAGGTTTATCATCAGGACCGGGTTCAAC 31117 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGAC--CTGTTGGTCCGAAAACTTTCTTCCG 7939 ||| | | ||| ||| || || | || || | | | || ||| ||||||||| Sbjct 31116 TTTAAAAGGCCATAATTTAATGTCTTTTTATACTACAGAT--TCATTAAATTTTCTTCCG 31059 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || | |||||| || ||||| | ||||||| | ||||| | ||| || |||||| || Sbjct 31058 ATTAAACGCTTGGCGTCAAAGATTGTGTTTGTAGGGTTTCTTGCTACTTAGTTCTTTGCA 30999 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 || || ||||| | | ||| | |||| || || || || || |||||||| |||| | Sbjct 30998 GCATCTCCGATTAATCTTTC---AGTTTCGGTGAATGCAACATATGATGGGGTAGTTCTA 30942 Query 8060 TTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAA 8119 || ||||||||||| ||||| |||||||| |||||| | || ||||| || ||| Sbjct 30941 TTACCTTGGTCGTTTGCAATGATTTCTACCTTGTCGTTCATGAATACTCCGACACAAGAA 30882 Query 8120 TACGTTGTTCCTAAATCAATACCGATTGC 8148 || || ||||| | ||| ||||||| ||| Sbjct 30881 TAAGTAGTTCCGAGATCGATACCGACTGC 30853 >seq703 Length=10631 Score = 165 bits (182), Expect = 1e-35 Identities = 470/708 (66%), Gaps = 22/708 (3%) Strand=Plus/Plus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| | || |||||| | || || || || || || || | || ||| ||||||||| Sbjct 5910 TCTCTAGTCAAAATCTGCTCCTCCTAAATGAGTGTCTCCGGAAGTGGCTACGACTTCAAA 5969 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 | || | || || ||| | || |||||||| ||||||||||||| || || | Sbjct 5970 AACTCCATCATCTATAGTTAGAATAGATACATCAAAAGTACCACCACCCAAATCGAATAC 6029 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 || | |||| | || || |||| || || || | ||| || || ||||| || || || Sbjct 6030 TAGAATGTTCTTTTC-TC--CTTTCTTTTTGTCTAAACCATATGCTATAGCTGCTGCTGT 6086 Query 7630 TGGTTCA-TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 |||||| |||| | | || ||| |||| || || ||||| |||||||||| || Sbjct 6087 GGGTTCATTTAAGATTCTCAATACA-TTCAAACCTGCGATAGTACCCGCATCTTTAGTAC 6145 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTT-TC 7747 || || || | || ||||| ||||| || || || || || |||| | |||| || Sbjct 6146 TTTATCTTTATGCGTCATTAAAATAGGCAGGAACTGTCACTACAGCGTTTTTAACTTCTC 6205 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCT 7807 || || | | | | ||| ||||| |||||||| || ||||| ||||| | || || ||| Sbjct 6206 TT-CCTAAAAATGTTTCAGCGATTTCTTTCATCTTAGTAAGTACCATAGCCGATATTTCT 6264 Query 7808 TCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA---TCAACTTCAATCATGGGTTTATCC 7864 ||||| || || ||| ||||| || |||| | | ||| ||| |||||| | Sbjct 6265 TCAGCTGCGAAAACTTTAGTTTCTCCTTTAACATTCTATACTCTAATATATGGTTTACCA 6324 Query 7865 GCAGCACCGGGGATAACCTTATACG--ACCAATCTTTCATATCGTCTTGGACCTGTTGGT 7922 | | | || | ||| | | ||| ||| |||| | | || || | Sbjct 6325 TTTTTATC---AACAAGTTCATAAGGAAGGAATTTTT--TATCATACTATACTGTTTTAT 6379 Query 7923 CCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGG 7982 | | ||| || | || || | | ||| ||||| ||| || | | ||||| | Sbjct 6380 CAGTAAATTTACGACCAATTAATCTCTTAACATCATAAAGGGTTCTAGTAGGGTTATTTA 6439 Query 7983 CTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGT 8042 | | | ||| || || | || || || | |||||| | || ||||| ||||| | Sbjct 6440 CAGCCTAGTTTTTAGCTGATTCTCCTATTAAACGTTC---TTCGTCGGTAAATGCGAC-T 6495 Query 8043 AC-GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGC 8101 || |||||||| | ||||| ||||| || || | |||||||||||| |||| | Sbjct 6496 ACTGATGGGGTAATACGATTACCTTGTTCATTGGGAATAATTTCTACTTAACCGTTCTTG 6555 Query 8102 CAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | | || || || ||||| |||||||||||||| ||||||||| || Sbjct 6556 AATATACCTACACAAGAATAGGTTGTTCCTAAATCTATACCGATTACT 6603 >seq861 Length=133231 Score = 138 bits (152), Expect = 1e-27 Identities = 393/594 (66%), Gaps = 15/594 (3%) Strand=Plus/Plus Query 105218 CATCAACGTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTAT 105277 || |||| ||||| ||| | || || || | ||||||||| || |||| || Sbjct 47962 CAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTG 48021 Query 105278 CCGTAAACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTAT 105337 ||| | || | |||||| |||||||||||||| | |||| || || | | ||||| Sbjct 48022 AAGTATATTCAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAAT-TTTAT 48080 Query 105338 GGTTCGACTTTTC-ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTT 105396 | ||||| |||||| || ||||| || | |||||| || ||||| ||||| || Sbjct 48081 TAATTACTTTTTCTATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATT 48140 Query 105397 TGGGATTTAATAATTGCTTTCCAAA--TCTCCGAAGCTGGTACAACTTTAGTTGCGATAC 105454 | || | |||||| ||| ||||| |||| | ||| | ||| || | | | Sbjct 48141 TAAGAATCAATAATATCTTGCCAAAGTTCTCTG--GCTTTAATTCTTTTTCTTCCTTTTC 48198 Query 105455 CTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGAC 105514 |||| ||| ||||||||||| || | |||||| |||| || | || || | | || Sbjct 48199 CTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAAC 48258 Query 105515 CCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGA 105574 | | || ||| || | ||| | ||||| |||| | ||| | | |||| | Sbjct 48259 CTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAA 48318 Query 105575 ACAAATCTGGAATCCACATGGC--TGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACC 105632 | | ||| |||||||| | || ||||||| ||| | | | | | |||||| | || Sbjct 48319 AAATATCAGGAATCCATAACGCATAGAAAAGATCTCTTG-CTCTTTG-CTCTTCTTTTCC 48376 Query 105633 TTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGAC 105692 ||||| | || | |||||||| || ||| || ||||| ||||| ||||| | Sbjct 48377 ATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATAT 48436 Query 105693 TGCAATAGACCCTTTAC----GACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTAT 105748 |||| || ||||| | | | || | ||| | |||||||| || || ||| Sbjct 48437 AGCAAATGATCCTTTTCTTTTGCCACCTC-CTTAGTCTACATATCTGGCTGTATCATTAA 48495 Query 105749 ACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATAT 105802 ||||| |||||| |||||||| |||| || |||||| ||||| | ||||| Sbjct 48496 ACACTTTTAACATCGGAATAATTCCATTAGAATGTCCATTAGTTCCTCTAATAT 48549 >seq1353 Length=60684 Score = 125 bits (138), Expect = 9e-24 Identities = 465/716 (65%), Gaps = 12/716 (2%) Strand=Plus/Minus Query 115249 GCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTTCAATTGTA 115308 || || | ||| ||||||||||| ||| ||| || || ||||| | | || | Sbjct 30229 GCTTCAGAAATAAATTCTTTTTCAATTTCAACAGCTTCAGCGATAATAACATTAACTTCT 30170 Query 115309 TTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCAACC--GCAAATTCTTGGTGCA 115366 | || || | ||| |||| | || |||| ||| ||| | ||||| ||| || | Sbjct 30169 TCTTTAGCTAATTTATTTTACATCA--TTGAGTAAAGCAAACAAGCAAAATCTGTATGTA 30112 Query 115367 TACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCTCT 115426 ||||| |||| ||| | |||||| |||| |||||| || | ||| ||| | Sbjct 30111 ATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGTTAAACCAGGCATTAAAGATCTTT 30052 Query 115427 TTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCAA 115486 |||| | ||||||||| || || ||||| || |||||| || ||||||| | |||| Sbjct 30051 TTTTAAGCCAAAAAATGGCGCAGAAACTTCCACTGAAGAAGATTCCTTCAATAGCTGCAA 29992 Query 115487 AGGCTAATAAACGTTCAGC-AAATGGTCGTTTCTTATCAAACCACTTCATAGCCCATTTC 115545 | || | ||| || ||| |||| ||| || |||| || ||| || | |||||||| Sbjct 29991 ATGCAACTAATCGAGAAGCGAAATTGTC-ATTATTATTAATCCATTTTAAAGCCCATTAA 29933 Query 115546 GCCTTTCT-TTCGATACACGGAATTGTTTGAATTGCTTCGAATAATTGTTTCTTTTCGCT 115604 || ||| | || |||| ||||| || || |||| || | | ||||| | Sbjct 29932 GCTTTTTTATTTATTACA-GGAATATTTAGACAAGCTTTAAAAAGAAACTCTTTTTCATT 29874 Query 115605 AGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGTACCATTT-CAT 115663 | || ||||||||| | ||||| | | | || ||||| || | ||| ||| Sbjct 29873 ATCATCTTTTATATAAGTATCTATTAATAAAGAATAAGTTTCGGAATGAATATTTTCCAT 29814 Query 115664 TGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTATTTCATCTGCAAAAT 115723 | | || | | |||| || | || || || | || || | |||| | |||| Sbjct 29813 AGCTA-TTTAAAATCCATAGAAAGCTCTTGCTTCTGGAATTTAAACTTCA-CACATAAAT 29756 Query 115724 TATT-ATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATAT 115782 |||| | || |||||| | ||| || ||||| ||| | |||||||| || | || ||| Sbjct 29755 TATTCAGCTAAATTTTCTAGAACAATTCCATCTGAAGCTGCAAAAAATGCAAGAACATAC 29696 Query 115783 TTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAG 115842 || ||||| ||| | || |||| | ||| | |||||| | || ||||| ||| Sbjct 29695 TTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCCCAATCTTTCAAATCTTAATAAAGA 29636 Query 115843 TCTATCTCTTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAAGTCCATAAATTT 115902 || || || || || |||||| ||| | | ||||| |||| ||||| || Sbjct 29635 TCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCTTTTTTGTACATTTCCCATATTTTA 29576 Query 115903 TCATGTTCTATTGGAAATACAGTAAACCTACTGAGTGTTGGTAAAAGCATTGGTTC 115958 | || || |||||| || | | ||| || | | || | |||| |||||||| Sbjct 29575 TTATATTTTATTGGGAACATAACAAATCTGTTTGGATTTTCTTAAAGAATTGGTTC 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635116786714280