Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq861 102 1e-16 >seq861 Length=133231 Score = 102 bits (112), Expect = 1e-16 Identities = 230/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || || |||| |||||| | ||||||||||| ||| |||||| || || | Sbjct 47791 CATCAGCAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGG 47850 Query 106338 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 | ||| ||||| ||||| ||||| |||| ||||| || || || || | Sbjct 47851 CCTAAGGAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATTT 47910 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAG------TGCGAGTCTCTTCATTGACAT 106451 ||| ||||| | | ||| | ||| || ||| | | | |||||| ||| Sbjct 47911 TTGATATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAA 47970 Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 | ||| | | || || |||||||| || ||||| | ||||| || || | Sbjct 47971 ATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATT 48030 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | |||||| |||||||| || ||||| |||| ||||||||||| | || ||||| | Sbjct 48031 CAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTT 48090 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 || | || || ||||| || || | ||| || || || || || || Sbjct 48091 TTCTATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTC 48136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965925109080