Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1314 170 4e-37 seq892 150 4e-31 seq1181 149 1e-30 seq1038 134 3e-26 >seq1314 Length=139336 Score = 170 bits (188), Expect = 4e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || |||||||| || |||| |||||||||||| | |||||| Sbjct 38384 TCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAAAGAGT 38443 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | ||||| ||||| ||||||| || || ||||| ||||| || Sbjct 38444 TCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGAATTCC 38503 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||| ||||||| ||| || || ||||| | || ||| ||| || || | Sbjct 38504 TTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACATCTAA 38563 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || |||||||| |||||||| ||||| | || ||||| Sbjct 38564 AGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTT 38607 >seq892 Length=79579 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || || || || ||||||| ||||||||| || | |||||| Sbjct 47358 TCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGT 47417 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || |||||||||||||||| || || ||||| ||||| || Sbjct 47418 TCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACC 47477 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| ||||| |||||||| ||||| | ||| ||| ||| || || | Sbjct 47478 TTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAA 47537 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| || || ||||| ||||| | || |||| Sbjct 47538 AGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATT 47580 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| || || | || || || || ||||||| ||||||||| || | |||||| Sbjct 46674 TCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGT 46733 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || |||||||||||||||| || || ||||| ||||| || Sbjct 46734 TCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACC 46793 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| ||||| |||||||| ||||| | ||| ||| ||| || || | Sbjct 46794 TTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAA 46853 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || ||||| ||||| | || ||| Sbjct 46854 AGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || || || || ||||||| ||||||||| || | |||||| Sbjct 47130 TCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGT 47189 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || |||||||||||||||| || || ||||| ||||| || Sbjct 47190 TCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACC 47249 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||||| |||||||| ||||| | ||| ||| ||| || || | Sbjct 47250 TTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAA 47309 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || ||||| ||||| | || ||| Sbjct 47310 AGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || || || || ||||||| ||||||||| || | |||||| Sbjct 46902 TCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGT 46961 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || |||||||||||||||| || || ||||| ||||| || Sbjct 46962 TCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACC 47021 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||||| ||||| || ||||| | ||| ||| ||| || || | Sbjct 47022 TTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACATCTAA 47081 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || ||||| ||||| | || ||| Sbjct 47082 AGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 >seq1181 Length=100449 Score = 149 bits (164), Expect = 1e-30 Identities = 188/258 (73%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || |||||||| ||||||| |||||||||||| | |||||| Sbjct 74912 TCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAAAGAGT 74971 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || || || || ||||||| || || ||||||||||| || Sbjct 74972 TCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGAATTCC 75031 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| |||||| || || || ||||| | || || || || || | Sbjct 75032 TTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACATCTAA 75091 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTGGT 195158 || | || || ||||| || ||||| ||||| | || ||||| | | | || | Sbjct 75092 AGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTTTTAAATT----TT 75147 Query 195159 TCTTTTTAAATAtttttt 195176 | ||||| | |||||||| Sbjct 75148 TTTTTTTTATTATTTTTT 75165 >seq1038 Length=46086 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || ||||| ||||| |||| |||||||||||| | ||| || Sbjct 44064 TCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGT 44005 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || |||||||| || | || || || ||||||||||| || Sbjct 44004 TCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACC 43945 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||| || || ||||| ||||| | || ||| ||| || || | Sbjct 43944 TTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAA 43885 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || ||||| || || ||||| || || | || ||||| Sbjct 43884 TGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTT 43841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109452927875039