Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq861 408 5e-109 seq1353 331 1e-85 seq451 95.1 1e-14 >seq861 Length=133231 Score = 408 bits (452), Expect = 5e-109 Identities = 646/919 (70%), Gaps = 6/919 (1%) Strand=Plus/Plus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 ||||| || | |||||||||||| | |||| ||| |||||||| || ||||||| | Sbjct 47985 ATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAATAATTTCAGTA 48044 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || | ||| || | | ||||| |||||||||| | |||| | | ||||| || Sbjct 48045 CACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAGCA 48104 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || || | |||| |||| |||||||||||||| | ||| ||||| ||| || |||| Sbjct 48105 TCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAA 48164 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAAC 48122 | || || || || ||| |||| || ||| ||||| || | Sbjct 48165 AGTTCTCTGGCTTTAATTCTTTTTCTTCCTTTTCCTTCTCTTTCATATTTCTCGTAGAGT 48224 Query 48123 TTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAAT 48182 || |||||||| || || | |||| | ||| || |||||||||||| |||||||| Sbjct 48225 TTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAA 48284 Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 | ||||| ||||| | ||||| ||||||| ||||| || ||||| | || ||| Sbjct 48285 GTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCCATAACGC-ATA 48343 Query 48243 -AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301 || | ||| || | |||| | ||||| || ||| ||| |||| | || | ||| || Sbjct 48344 GAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATC 48403 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | | |||||||||||| ||||| |||||||| || | | ||| || ||| ||| Sbjct 48404 GAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACC 48463 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 ||||| |||| ||||||||| |||| ||| | ||| ||||||| || | ||| ||||| Sbjct 48464 TCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATT 48523 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 || ||||| ||||| ||||||||| | || |||||||||| || ||||| Sbjct 48524 AGAATGTCCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAAC 48583 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 |||||| || || || | |||||||||| |||||| ||| | |||||||| || || Sbjct 48584 ACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCC 48643 Query 48542 TTCTATACTATCA-TCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 ||| || |||| |||| |||| | |||| ||||||||| ||| | || | || Sbjct 48644 TTCAATTGAATCACTCTA-CATAGTCAATAAGAAACAACTACTCATCTAAGGGTTTGGAG 48702 Query 48601 TTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTAT 48660 ||||| |||||||| || |||| ||||||| | |||||||| || | || || | Sbjct 48703 ATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTCACTCATTAAATTGT 48762 Query 48661 ATGTT-TCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 | ||| | ||| || | || || | || || |||||||| || || | ||||||| Sbjct 48763 AAGTTCTGAAT-GCACTTTATAAGTCTCTTTTGTGGATACCTATGGAAACTCTCATTAAC 48821 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 ||| || |||||||| |||||||| | ||||| |||||||| ||| |||| || Sbjct 48822 ATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAGATAAGATCTTTCTAAA 48881 Query 48780 GTTTTAAAACCAAAATAGT 48798 || || ||||||||| ||| Sbjct 48882 GTCTTGAAACCAAAAAAGT 48900 Score = 161 bits (178), Expect = 1e-34 Identities = 314/462 (68%), Gaps = 15/462 (3%) Strand=Plus/Plus Query 47018 TAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAA 47077 |||| | || ||||| || ||||| ||| ||| |||| ||||||||| ||| | Sbjct 47102 TAAAAATTAAATACCTGTTTTTAATCCTTTTTCCCAAGCATAAAAATGCATAGAAGTCAT 47161 Query 47078 TTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGC 47137 ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 47162 TTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTAAGATTAATCAATAAATGG 47221 Query 47138 ACCTCTATCAGCTGCCATATCTAAAATAA------CCCTTTGTGGTATCTCCCATACTGT 47191 || || || || | ||||| ||| || |||||| | ||||| || || Sbjct 47222 ACTCCT------TGACAAAGCTAAATTAATAATGGCCTTTTGTGAAACTTCCCAAACAGT 47275 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGAT-TAGTATT--TTGAATAGATCCTCCgtt 47248 ||||||||| | || | ||| || | | | |||| || || |||||| | Sbjct 47276 TTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAAACAGATCCATTATA 47335 Query 47249 ttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaa 47308 | | | || || || | | | ||| | ||| || | |||| || | Sbjct 47336 AGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTAATTAAATCTTAAAC 47395 Query 47309 AAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACT 47368 |||||||||||||||| |||||| || | |||||||| | |||||| |||| Sbjct 47396 AAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTTGTATATAAATTAGA 47455 Query 47369 TGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| ||||| | ||||||| |||||| ||||||| || ||| || || || ||||| Sbjct 47456 AGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTAGAAGCAGTTGGCAT 47515 Query 47429 GGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTAT 47470 | || | ||| | |||||| | |||||||||| ||| Sbjct 47516 AGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATAT 47557 >seq1353 Length=60684 Score = 331 bits (366), Expect = 1e-85 Identities = 531/750 (71%), Gaps = 21/750 (3%) Strand=Plus/Minus Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893 |||||| || ||||||| |||||||| || || | || |||||||| ||| || | || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 18894 TGCCTCTGATATAATAGATACAACTCTATCTTCATTAGG-AGGGTATAGAAGATGTTTAA 18952 || || | |||||| |||| ||||| |||| | ||| | || || | Sbjct 30197 AGCTTCAGCGATAATAACATTAACT---TCTTCTTTAGCTAATTTATTTTACATCATTGA 30141 Query 18953 --ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 | | |||||| |||||||| ||||| ||| |||||||| ||| |||||||| || Sbjct 30140 GTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGA 30081 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATC 19069 ||| |||||||||||||| | ||||||||| | ||| || || | ||| || || Sbjct 30080 AAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGC-GCAGAAACTTC 30022 Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT 19129 || ||||| || ||||| | |||||||| ||||||| || | || | | Sbjct 30021 CACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTG---T 29965 Query 19130 CATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC-ACATGGCATTGTC 19188 ||||||||| ||||||||| | ||||| | ||| || || |||| ||| || || | Sbjct 29964 CATTATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACA-GGAATATT- 29907 Query 19189 TCTATAGAA---TTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 || | || ||||| ||| || |||| |||||| | ||| | |||||| Sbjct 29906 --TAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATT 29849 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 |||||| || |||| |||||||||||||| ||||| || | |||||| || ||| | Sbjct 29848 AATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCT 29789 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTAT 19364 |||||||||| || | ||||||| ||| |||| ||| | |||||||| ||| || Sbjct 29788 CTTGCTTCTGGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAAT 29730 Query 19365 TCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGT 19424 |||||| ||||||||||||||| | |||| |||||||| ||| | || | || Sbjct 29729 TCCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGT 29670 Query 19425 TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| | | |||||| || | ||||| | | | ||| | ||| || |||||||||| || Sbjct 29669 CAATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGA 29610 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| | ||||||| ||||| | |||||| | | ||||| ||| || || |||||||| Sbjct 29609 AGCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAA 29550 Query 19545 TCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| ||| |||||||| |||||| ||||| Sbjct 29549 TCTGTTTGGATTTTCTTAAAGAATTGGTTC 29520 Score = 102 bits (112), Expect = 9e-17 Identities = 156/219 (71%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 18614 AAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTTT 18673 |||||||| ||| || ||| || ||||| |||||| ||| ||||| ||||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACTTTATCTTCTTTAGAAGACATAACTCCTGATTTTT 30473 Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCC 18732 |||||| ||||||| ||||||||||||||||||||||| | | |||| ||| ||| Sbjct 30472 AATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATAT-CATATCC 30414 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC----TAATTCTAATAG 18788 || | ||||| || |||||| |||| ||| |||| | || ||| | || Sbjct 30413 ATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAAGAGAATACAAA--- 30357 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCAT 18827 |||||||| || ||||||| | |||| |||||||| Sbjct 30356 -AGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 >seq451 Length=27636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 |||||| ||||||||||||| ||||||||||| || |||| | ||| |||| ||| || Sbjct 1340 GCAAATTAAGGAAAAATAGTTATAGTTGCAGCCTTAGATGCTTCTTTTTAAAGGAAAGCT 1399 Query 65974 TTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGTG 66033 ||| |||| |||| ||||| |||| ||| |||| | ||| ||| | | ||| || Sbjct 1400 TTTAATAATATATTGGATTTAGTTCCTATATGTGAAGAAATAATTAAATTAAAAGCAGTT 1459 Query 66034 TGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTATAGGTACA-GAAACAGAGAT 66092 || | | ||| |||||||| || ||| ||| | | ||| || || |||| | Sbjct 1460 TGCTTAATTTGTAAAGAAGATGCAAGTTATTCGAAAAGAAAAGGCTCATCTAAAAGAG-T 1518 Query 66093 AGAAATTATAGGCGGTAAAGA 66113 ||||| || || ||| |||| Sbjct 1519 TGAAATGATTGGAGGTGAAGA 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094627831880