Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1314 107 1e-18 seq1181 95.1 9e-15 >seq1314 Length=139336 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | ||| |||||||| || ||| || |||| ||||||||||||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| |||| || || | ||||| || || || |||| | || ||| | ||| Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| ||| |||||| | | || || || || || || Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| || |||||||| || ||||| | ||| Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACAT 38605 >seq1181 Length=100449 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| | ||| || ||||| || ||| ||||||| |||||||||||| || Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || ||||| | || ||||||||||| |||| | || ||| | ||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || ||| ||| | | || || || ||||| || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || || ||||| || ||||| | ||| Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACAT 75133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928235720491