Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1181 105 6e-18 seq1314 104 2e-17 seq892 89.7 4e-13 >seq1181 Length=100449 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||| |||| || || ||||||||||| |||||||| || || || || | Sbjct 75137 AAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGC 75078 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || | | | || | || ||||| |||||||| ||| | || ||| Sbjct 75077 ATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGA 75018 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | || | |||||||| ||||| || ||| ||||||||||| | |||| | | ||||| Sbjct 75017 TTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTA 74958 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||| |||||||||| ||||| || | || || |||||| ||||||| Sbjct 74957 CAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq1314 Length=139336 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||| |||| || || ||||| ||||| || ||||||||||| || ||| || Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || | | | || | ||| |||||| ||||| || ||| | || |||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || | |||||||| || || || ||| |||| ||||| | |||| | | ||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||| |||| ||||| ||||| || |||| || |||||| ||||||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGG 38379 >seq892 Length=79579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || |||| |||| || || ||||||||||| || ||||| || || || ||| | Sbjct 47583 AATAATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGC 47524 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || | | | | |||| |||||| |||||||| || | ||| ||| Sbjct 47523 TTCCGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGA 47464 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 | || | ||||||||||| || || ||| |||| ||||| | |||| | | || || Sbjct 47463 TTAATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTA 47404 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||| |||||||||| || || || | || || |||||| |||| || || Sbjct 47403 CAATATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTAT 47350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| || || ||||||||||| || ||||| || || || ||| |||| Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | |||| |||||| |||||||| || | ||| |||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||||||||| || || ||| |||| ||||| | |||| | | || || || Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| |||||||||| || || || | || |||||| | ||||||| Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGG 46669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| || || ||||||||||| || ||||| || || || ||| |||| Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| |||||| || ||||| || | ||| |||| || Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | ||||||||||| || || ||| |||| ||||| | |||| | | || || || Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||| || || || | || || |||||| |||| || || Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTAT 46894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425394342619443