Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq861 237 8e-58 >seq861 Length=133231 Score = 237 bits (262), Expect = 8e-58 Identities = 961/1483 (65%), Gaps = 61/1483 (4%) Strand=Plus/Plus Query 24911 ATATTT--TGAACTGATCCATTTTCTCTCAATAGATTCAATCTCAT-ATTCGGTGTCCAA 24967 |||||| | ||| |||||||| | || ||| || | ||| | | | || ||||| Sbjct 47311 ATATTTATTAAACAGATCCATTATAAGCCAGTAG-TTAATTCTTAACACTAGGAGTCCAT 47369 Query 24968 AGATTAATTTTTTCAAGATCTCTAATCAAG-TGTTTATTTATGATAATAAATTCTCCAGA 25026 |||| ||||| | |||| ||| |||| || ||| | || |||||| || | Sbjct 47370 TGATTTATTTTAATTAAATCT-TAAACAAGATGAGGATTAACACAAACAAATTCACCCGC 47428 Query 25027 CAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAA 25086 | ||||||||| | |||| || ||||| | ||||||||| ||||| ||||||||| Sbjct 47429 GAGTACTCTTCTTGTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAA 47488 Query 25087 GATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATA 25146 |||| ||||||||| || |||||||| |||||||| || |||||||||| |||||| Sbjct 47489 AATTTAAGAAGTAGAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATA 47548 Query 25147 TTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAATTATTATCTAACTCGATATCGTT 25206 ||| || | |||||| ||||||||| || | || || || | || Sbjct 47549 TTTTTATATTTTACTTTTTAAAGAATCCCAATCATAACCAC-ATTTAT---GAGGT--TT 47602 Query 25207 ATCAT---ATAAATCAAATTGTAACAATCCACTT---GCTGCAGGCGATTGATCAAAAGT 25260 || || |||||||||| | ||||| || | ||||| || |||||| Sbjct 47603 ATAATTCCATAAATCAAACT---ACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGA 47659 Query 25261 TGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACAT 25320 | ||| || | | |||| |||| || | ||| || | || ||||||| || Sbjct 47660 GGCATAACATCCATCTTTTATAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAAT 47719 Query 25321 ATTTTCAAAAATCGCTTTGTTTAAAAACTTAG-CTTTTTCTCCATCGAAAGCAATTTCCA 25379 | ||||||| || ||| || | || || ||||||| | ||||||| || || | Sbjct 47720 AGTTTCAAAGATTT-TTTCATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAAACTTTAA 47778 Query 25380 --TTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATT 25437 || | | || | ||| || | ||| | ||| |||| ||||| || | |||||| | Sbjct 47779 GCTTCATG--AAGGCATCAGCAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCAT 47836 Query 25438 ATTACTTA-TCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGAT 25496 ||| || ||| | || | |||||| ||||| ||| || || | | || | Sbjct 47837 ATTGGATAATCTGGCCTAAGGAACT-GGATAGTAATTTTCATCAATAACTCTGTTTAAGT 47895 Query 25497 TCTTTATGGCAAGCTTTGTGTATTTTCT-CAACTCAATAAAGTCAAAATAAGGCTTATCG 25555 | || | | |||| ||||| | ||| | | || | || ||||| | || || Sbjct 47896 TAAAAGTGACTATTTTTGA-TATTTCGTACAATTTATTATATTCGAAATATGAATTTTCA 47954 Query 25556 TTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGT 25615 || |||| |||||||| |||||| || || || |||||||| ||||| | Sbjct 47955 TT---ATCTTCAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATT 48011 Query 25616 TCTTTCCCGTCA-GAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCC 25674 || | | || | | ||||||| | || || |||| || || | | | || || Sbjct 48012 TCAT-CTGGTGAAGTATATTCAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCC 48070 Query 25675 ATAATTCTTTTGATTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTTC 25733 |||| | || |||| | | |||| |||| |||||||||| | ||| || |||| Sbjct 48071 CAAATTTTATTAATTACTTTTTCTATT-ACAAGCATCTTTATATAACATATAAGGAGTTC 48129 Query 25734 CTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACTTTCTTTA 25793 | ||||| |||| ||| | | ||| | | |||||||||||| ||||| | | | ||| Sbjct 48130 CAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAATTCTTTTTC 48189 Query 25794 CGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTTCAACAAATTCTTGATTTATTTTCT 25853 || || || || | | ||||| |||| ||||||||| | | Sbjct 48190 TTCCTTTTCCTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTC-------TCCC 48242 Query 25854 CAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGACAGAATAAATGCCAATCAG 25913 || | | || | | || ||| | || || || | ||| ||||| Sbjct 48243 CAAACATCAGGTAAACCTAAACATTCA--------TTAGGGCACATCAAAGTCCAATGTT 48294 Query 25914 CATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCT 25972 ||| | |||| ||||| ||||| | ||| |||||||| | ||||| || | |||| Sbjct 48295 CATCTGCAATAACTCTTCTC-ATAAAAATATCAGGAATCCATAACGCATAGAAAAGATCT 48353 Query 25973 CTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCT 26032 || ||||| ||||||||||| ||||| ||||||| | ||| ||||| |||| ||| Sbjct 48354 CTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCA 48413 Query 26033 GAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCT 26092 | ||||| ||||| ||||| |||||||| ||||||||||| || || |||| ||| Sbjct 48414 GCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACCTCCTTAGTCT 48473 Query 26093 ACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCG 26152 || ||||| || || ||||| || ||||| ||||| |||| | |||| | ||| ||| Sbjct 48474 ACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATTAGAATGTCCA 48533 Query 26153 TTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCA 26212 || || | ||| | || ||||| |||| ||| | || ||| ||||| Sbjct 48534 TTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAACACCTATTCCT 48593 Query 26213 CCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTA 26272 || || | || || || ||||| | | | |||||| | || |||| || | Sbjct 48594 CCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCCTTCAATTGAA 48653 Query 26273 TCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTT---GTTCCTGAA 26329 |||| | ||| ||||| |||||| | | || | || | || | ||||| Sbjct 48654 TCACTCTACATAGTCAATAAGAAACAACTA-CTCAT--CTAAGGGTTTGGAGATCCTGCG 48710 Query 26330 TTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA 26372 |||||||| || || || |||||||| | || |||||||| Sbjct 48711 TTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTCACTCA 48753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253033779723275