Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq861 102 1e-16 >seq861 Length=133231 Score = 102 bits (112), Expect = 1e-16 Identities = 230/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || |||||||| || |||||| | || || ||||||||||| | || ||||| || | Sbjct 48136 GAAACTGGAACTCCTTATATGTTATATAAAGATGCTTGTAATAGAAAAAGTAATTAATAA 48077 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||| || || | || |||||| | || || |||||| | || || || Sbjct 48076 AATTTGGGGACTATTAGAAGTTCAAATTTGTGTACTGAAATTATTGAATATACTTCACCA 48017 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| | ||||| || |||||||| || || | | ||| | ||| |||||| Sbjct 48016 GATGAAATTGCTGTATGTAATTTGGCTTCTATTTCTTTATAAAAATTTGTTGTTGAAGAT 47957 Query 76085 ACTCGCA------CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAA 76138 | | | ||| || ||| | ||| | | ||||| |||| || || || Sbjct 47956 AATGAAAATTCATATTTCGAATATAATAAATTGTACGAAATATCAAAAATAGTCACTTTT 47897 Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAAT 76198 || ||||| |||| ||||| ||||| ||||| ||| || || || ||| Sbjct 47896 AACTTAAACAGAGTTATTGATGAAAATTACTATCCAGTTCCTTAGGCCAGATTATCCAAT 47837 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 ||| ||| ||||||||||| | |||||| |||| || || |||| Sbjct 47836 ATGAAACATAGACCTATTGGAATAGGTGTTTAAGGACTTGCTGATG 47791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554558988960