Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_020860.1 Length=44557 Score E Sequences producing significant alignments: (Bits) Value seq1273 125 2e-24 >seq1273 Length=67641 Score = 125 bits (138), Expect = 2e-24 Identities = 295/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 43497 AGTTGTCGTCCAACAATTCTTATCTTCAATACCTCTAGCTTTTACACAATGATGAATAGC 43556 |||||| || || ||| | ||| ||| ||||| ||||| ||||| | ||| |||| Sbjct 28311 AGTTGTAGTAGTACTATTTTGATCCATAATCCCTCTTGCTTTAACACAGTAATGTGTAGC 28252 Query 43557 ACGTATTTCAACAGCTACATTTTCAGTTTGCAAAATAATACACAGAGCGGCATGGATTTG 43616 | || | ||| |||||||| || |||| | |||| | | ||| || | |||| Sbjct 28251 ATCGATATGAACGGCTACATTATCTGTTTCAACAATAGTCTGTAAAGCTGCGAGAATTTA 28192 Query 43617 CAAAGTCAACCTTTCTTGCACTTGTGGTCGCTTACTAAAAAATCTAACAATTCTATTCAT 43676 | || || ||||||| |||| |||| | | ||| ||| | || |||||||| || Sbjct 28191 TTATGTTAATCTTTCTTATACTTAAGGTCTTTAAGAAAAGAATTTTACTATTCTATTTAT 28132 Query 43677 TTTAGAAAGTCCCAATACGGTGTTTCCAGGTATGTAAGCTACTTTCGCTTGTCCTTCAAT 43736 |||||||||||| || || ||||| ||| || || || || || || | || |||| Sbjct 28131 TTTAGAAAGTCCTAAAACTTTGTTTTTAGGAATATAGGCAACATTTGCATAACCATCAAA 28072 Query 43737 GTTTTGAAAATGATGCTCACAGACACTACTCACATCTATGCCTCCTT--CAATAACCATT 43794 | ||||||||| ||||| | | | | || | || | |||||||| Sbjct 28071 AGTAATAAAATGATGTTCACAAGTTGTGGTAAAAGAAAT--TTTATTAACTTTAACCATT 28014 Query 43795 TCATCAGCTCTCATCTTATTTTCAATTTGAGTACAAGAAGGAAAGTTGGCGTAGTCAAGT 43854 |||||| | ||| ||||| ||||| || || |||||| || | || | | | Sbjct 28013 TCATCATATTACATTTTATTATCAATGGTTGTCATAGCAGGAAAATTTTCATAATTTAAT 27954 Query 43855 CCTTCAAATATTTCGTTGACGAACATCTTAGCGTATCTAGATGGAGTTTCTTTTAAGCTG 43914 || ||||||||| || || |||| || || |||| |||||| ||||||| || Sbjct 27953 CCACTAAATATTTCATTAACATACATTTTTGCTATTCTACTTGGAGTATCTTTTATACTA 27894 Query 43915 TCAT-CATCAAGGTTTAAATT 43934 |||| ||| | ||||||||| Sbjct 27893 TCATCCATTTA-GTTTAAATT 27874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142457387796726