Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1181 158 2e-33 seq1038 145 1e-29 seq892 141 2e-28 >seq1181 Length=100449 Score = 158 bits (174), Expect = 2e-33 Identities = 186/251 (74%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | || | ||| | || | ||||| ||||||| || || || Sbjct 74906 ACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGA 74965 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| ||| || |||| |||||||||||| || | ||| | || ||| ||||| Sbjct 74966 AAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGG 75025 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| |||| ||||||| ||| | |||| ||| | |||||| | |||||| Sbjct 75026 AATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAAC 75085 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAA 193372 |||| ||| || ||||||||||||| ||||| || || |||| |||||| || |||| Sbjct 75086 ATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTTT--TAAA 75143 Query 193373 ATAATTATTTT 193383 | || |||| Sbjct 75144 TTTTTTTTTTT 75154 >seq1038 Length=46086 Score = 145 bits (160), Expect = 1e-29 Identities = 186/258 (72%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| |||| | || | ||| | || | ||| || ||||||| || || || Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| ||||||| |||||| || ||||||||||| | || ||| ||||| Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| ||||||| || |||| ||||| ||| ||| | ||| |||| || || Sbjct 43949 ATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACG 43890 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAA 193373 |||| || |||||||| || |||| ||||| ||||| |||| |||||| || Sbjct 43889 TCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTT------- 43837 Query 193374 TAATTATTTTAAATAATA 193391 ||||||||||||||| Sbjct 43836 ---TTATTTTAAATAATA 43822 >seq892 Length=79579 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| ||||||||||| |||| | || | ||| | || | ||||| ||||||| Sbjct 46888 ATTTACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTG 46947 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| || ||||||| |||||| || || || | ||| | || | Sbjct 46948 TAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAA 47007 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||||||||||| ||||| | ||| | |||| ||||| |||||| Sbjct 47008 TCTGGGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAA 47067 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| ||| || ||||| || |||| ||||| || || |||| ||| Sbjct 47068 GCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| ||||||||||| |||| | || | ||| | || | ||||| ||||||| Sbjct 47116 ATTTACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTG 47175 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| || ||||||| |||||| || || || | ||| | || | Sbjct 47176 TAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAA 47235 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||||||||||| ||||| | ||| | ||| ||||| |||||| Sbjct 47236 TCTGGGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAA 47295 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| ||| || ||||| || |||| ||||| || || |||| ||| Sbjct 47296 GCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Score = 136 bits (150), Expect = 7e-27 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| ||||||||||| |||| | || | ||| | || | ||||| ||||||| Sbjct 47344 ATTTACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTG 47403 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| || ||||||| |||||| || || || | ||| | || | Sbjct 47404 TAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAA 47463 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| |||| ||||| | ||| | ||| ||||| |||||| Sbjct 47464 TCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAA 47523 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT--TT 193362 | ||||| |||| ||| || ||||| || |||| ||||| || || |||| ||| || Sbjct 47524 GCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATT 47583 Query 193363 TATT 193366 |||| Sbjct 47584 TATT 47587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899631717463440