Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1353 223 5e-53 seq1038 185 1e-41 seq1181 152 8e-32 seq892 140 5e-28 seq1314 136 6e-27 >seq1353 Length=60684 Score = 223 bits (246), Expect = 5e-53 Identities = 462/682 (68%), Gaps = 10/682 (1%) Strand=Plus/Minus Query 18025 GCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTC 18084 || |||||| || | || | | ||||| ||| ||| |||||||||||| || || || Sbjct 30260 GCTATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTC 30201 Query 18085 AACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGC-AATTTATTAATTATGTGAT 18143 ||||| || || || |||| | | ||| || |||||||| ||| | || Sbjct 30200 AACAGCTTCAGCGATAATAAC-ATTAACTTCTTCTTTAGCTAATTTATT--TTACATCAT 30144 Query 18144 TATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGT 18203 | | || | ||||| |||||||| || ||||| ||||| ||||| ||||||||||| | Sbjct 30143 TG-AGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCAT 30085 Query 18204 TACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAAC 18263 | ||| ||||| || ||||||| | ||||||||| |||||||| || | ||||| Sbjct 30084 TTGAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAAC 30025 Query 18264 TACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT 18323 | | | ||||| || || |||| || || || | ||||| ||| ||| ||| Sbjct 30024 TTCCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGT 29965 Query 18324 ATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNAT-ACACGGTATA 18382 ||||| | | |||||||| ||||||| ||| || ||| || ||| Sbjct 29964 CATTATTATTAA---TCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACA-GGAATA 29909 Query 18383 CTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATT 18442 | ||| ||||| | | |||||||| || ||||||||||||||| || ||| Sbjct 29908 TTTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATT 29849 Query 18443 AACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGAT 18502 || |||||||| |||| ||||| || ||||||||||||| | ||| | ||| || | | Sbjct 29848 AATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCT 29789 Query 18503 CTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATA 18562 || || || ||| || || || | |||| ||| | ||||| || ||| || Sbjct 29788 CTTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATT 29729 Query 18563 CCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTG 18622 || || | || ||| |||||||| | |||||| ||||| || ||| | || ||| | Sbjct 29728 CCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTC 29669 Query 18623 AGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682 | | | ||| || | | ||||| | ||||||| ||| || | ||||||||| || Sbjct 29668 AATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAA 29609 Query 18683 GATTCGGCCTGTTTGTACATTT 18704 | | | ||||||||||| Sbjct 29608 GCGAGTTCTTTTTTGTACATTT 29587 >seq1038 Length=46086 Score = 185 bits (204), Expect = 1e-41 Identities = 200/267 (75%), Gaps = 10/267 (4%) Strand=Plus/Plus Query 155783 TAAAGTATTTATTGTTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAAC 155842 |||| | ||||| |||| |||||||| |||||| |||| ||| ||||||| Sbjct 43813 TAAATTTATTATTATTTAAAATAAAAA----------AAAATGTAAATTTTTGTTAAAAC 43862 Query 155843 ATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAA 155902 || ||||||||||||||||||||||| || |||| ||||||| ||| |||||| || Sbjct 43863 CTTAACTGGAAAAACTATTACATTAGACGTAGAAGCTTCTGATTCAATTGAAAACGTAAA 43922 Query 155903 AAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGG 155962 | || || ||||||| ||||| || |||||||| || ||||||| |||| || || Sbjct 43923 AGCCAAGATTTAAGATAAGGAAGGTATTCCTCCAGATTAATAAAGATTAATTTTCGCAGG 43982 Query 155963 TAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCT 156022 || | | |||||| ||||| | |||||||| ||||| | || ||| | || || Sbjct 43983 AAAATAATTAGAAGATGGAAGAACACTTTCAGATTACAATATTTAAAAGGAGTCAACTCT 44042 Query 156023 TCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||||||| ||||||||||||||||| Sbjct 44043 CCATTTAGTTTTAAGATTAAGAGGCGG 44069 >seq1181 Length=100449 Score = 152 bits (168), Expect = 8e-32 Identities = 184/250 (74%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 155802 AATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATT 155861 || ||||||||| || |||||| |||| || | |||||||| || || ||||| || Sbjct 75151 AAAAAAAATTTA---AAAAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATC 75095 Query 155862 ACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA 155921 || ||||| || || | || ||| ||| ||| || ||| ||||| |||| ||| Sbjct 75094 ACTTTAGATGTTGAGGCATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAA 75035 Query 155922 GAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACC 155981 ||||| || |||||||| || ||||| | || | |||||| || | | |||||| | Sbjct 75034 GAAGGAATTCCTCCAGATTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGC 74975 Query 155982 AGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTA 156041 |||||| | |||||||| ||||| | ||||| | || || |||||||| || |||||| Sbjct 74974 AGAACTCTTTCAGATTACAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTA 74915 Query 156042 AGAGGCGGTG 156051 ||||| |||| Sbjct 74914 AGAGGAGGTG 74905 >seq892 Length=79579 Score = 140 bits (154), Expect = 5e-28 Identities = 186/256 (73%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 155802 AATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATT 155861 |||||||| || ||| | |||| |||| || |||||||||| || |||||||| || Sbjct 47599 AATAAAAAAATAAATAA-ATAATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATC 47541 Query 155862 ACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA 155921 || ||||| || |||| ||| || |||| |||||| ||| |||||| |||| ||| Sbjct 47540 ACTTTAGATGTTGAAGCTTCCGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAA 47481 Query 155922 GAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACC 155981 ||||| || || ||||| || ||||| | || | || || || | | ||||| Sbjct 47480 GAAGGTATTCCCCCAGATTAATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGA 47421 Query 155982 AGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTA 156041 |||||| | || || || ||||| | ||||| | || || |||||||| || |||||| Sbjct 47420 AGAACTCTTTCTGACTACAATATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTA 47361 Query 156042 AGAGGCGG--TGTAAA 156055 ||||| || |||||| Sbjct 47360 AGAGGTGGTATGTAAA 47345 Score = 138 bits (152), Expect = 2e-27 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| || |||||||||| || |||||||| || || ||||| || |||| ||| Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| |||||| ||| |||||| ||||||||||||| || || ||||| || Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | || || || | | ||||| |||||| | || || || ||| Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAA 156055 || | ||||| | || || |||||||| || ||||||||||| || |||||| Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAA 47117 Score = 129 bits (142), Expect = 9e-25 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| || | |||||||| || |||||||| || || ||||| || |||| ||| Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| ||| || ||| |||||| ||||||||||||| || || ||||| || Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | || || || | | ||||| |||||| | || || || ||| Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAA 156055 || | ||||| | || || |||||||| || ||||||||||| || |||||| Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAA 46889 >seq1314 Length=139336 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||| |||| || ||||||| || || |||||||| ||||| ||||| || ||| Sbjct 38611 AAGAAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAA 38552 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | ||||||| ||| ||| || || ||||| |||| || ||||| || || ||| Sbjct 38551 GCTTCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCA 38492 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||||| | |||| || ||||| | | ||||| ||||||| | || ||| Sbjct 38491 GATTAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGAT 38432 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || ||||| | || || | || || ||||| || || ||||||||||| |||| Sbjct 38431 TACAATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGGTG 38377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731853547677200