Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1353 273 4e-68 seq1314 129 1e-24 seq1181 129 1e-24 seq892 127 4e-24 >seq1353 Length=60684 Score = 273 bits (302), Expect = 4e-68 Identities = 514/749 (69%), Gaps = 16/749 (2%) Strand=Plus/Minus Query 49694 ATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctac 49753 |||||| || | ||||| || ||||| || ||| ||||||||||||||| ||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 49754 agcttgtttaattatcataattatattatttttt-gataatttatatttaatatgattcg 49812 ||||| || || | | ||| || || ||| | |||||||| || | || ||| | Sbjct 30197 AGCTTCAGCGATAATAACA-TTAACTTCTTCTTTAGCTAATTTATTTT--ACATCATT-G 30142 Query 49813 catatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTAC 49872 || | ||||| |||||||| |||||||| || ||||| || ||||| |||||||| Sbjct 30141 AGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTG 30082 Query 49873 TAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTA 49931 ||||||||| || |||||||| ||| |||||||||||||| | || ||| ||||| Sbjct 30081 AAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAA-AATGGCGCAGAAACTT 30023 Query 49932 CTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT 49991 | | ||||| || || || | | |||||||| | || || | | || | Sbjct 30022 CCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCA 29963 Query 49992 TTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTT 50051 |||| || || ||||| |||| |||||| | |||||||| || || ||| |||||| Sbjct 29962 TTATTAT-TA--ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTT 29906 Query 50052 TCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAAT 50111 ||||||||| | | |||||||| |||||| Sbjct 29905 AGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAAT 29846 Query 50112 AAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT 50171 |||||||| |||| ||||| | | |||||||||||||| |||| ||| || |||| Sbjct 29845 AAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTT 29786 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTC-AGATACAATACC 50230 ||||||| | | |||||| | | ||| |||| ||||||| || ||| ||||| || Sbjct 29785 GCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGA-ACAATTCC 29727 Query 50231 ATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA 50290 ||| || ||||| || ||||| | ||| || |||||||| ||| | || ||| | || Sbjct 29726 ATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAA 29667 Query 50291 ATTTTCCCAAGATTCAAGATCGTTTGATAA--ATCTACTTCTTCTATTGTCCAAAATGAT 50348 |||||||| || | ||| || |||| ||| | ||| ||| |||||||||||| Sbjct 29666 TCTTTCCCAATCTTTCAAATC--TTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAA 29609 Query 50349 GCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATAT 50408 || | |||||| ||||||| |||| | | || || || || || | ||| || Sbjct 29608 GCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAAT 29549 Query 50409 CGTTTAGTAtttttttCTAATATCGGTTC 50437 | || | ||||| || | || ||||| Sbjct 29548 CTGTTTGGATTTTCTTAAAGAATTGGTTC 29520 >seq1314 Length=139336 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | || || ||||| | ||| | || || | ||||| |||||||| Sbjct 38378 ACCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGA 38437 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | || || |||| ||||||||| || || | ||| | || ||| ||||| Sbjct 38438 AAGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGG 38497 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || |||| ||||| |||||||| || ||||| || | ||| || Sbjct 38498 AATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAAC 38557 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 |||| |||||||||||| || ||||| ||||||| || || | |||||| || Sbjct 38558 ATCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTTCTT 38611 >seq1181 Length=100449 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | || |||||||| | ||| | ||||| | ||||| ||||| || Sbjct 74906 ACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGA 74965 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| |||| ||||||| ||| || ||||| || | ||| | || ||| || || Sbjct 74966 AAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGG 75025 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| |||| ||||| ||| ||||| || ||||| || | || || Sbjct 75026 AATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAAC 75085 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 |||| ||| || |||||||| ||||||||||| | || || | |||||| || Sbjct 75086 ATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTTT 75139 >seq892 Length=79579 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || |||||||| | || | ||||| | ||||| || ||| Sbjct 46894 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 46953 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || || |||| ||| || || ||||| | ||| | || ||| || Sbjct 46954 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47013 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||| |||||| ||| ||||| ||||| || || | ||| Sbjct 47014 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCA 47073 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || |||| ||| || ||||| || ||||||||||| Sbjct 47074 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 47108 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || |||||||| | || | ||||| | ||||| || ||| Sbjct 47122 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 47181 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || || |||| ||| || || ||||| | ||| | || ||| || Sbjct 47182 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47241 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||| |||||| ||| || || ||||| || || | ||| Sbjct 47242 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47301 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| || ||||| || ||||||||||||| || || | ||| Sbjct 47302 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Score = 125 bits (138), Expect = 1e-23 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || |||||||| | || | ||||| | ||||| || ||| Sbjct 47350 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 47409 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || || |||| ||| || || ||||| | ||| | || ||| || Sbjct 47410 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47469 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||| |||||| ||| || || ||||| || || | ||| Sbjct 47470 GGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47529 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT--TTTATT 192542 || |||| ||| || ||||| || ||||||||||||| || || | ||| |||||| Sbjct 47530 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATT 47587 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| | ||| |||||||| | || | ||||| | ||||| || ||||| Sbjct 46669 CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAA 46728 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | | || || |||| ||| || || ||||| | ||| | || ||| || || Sbjct 46729 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 46788 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| |||| |||||| ||| || || ||||| || || | ||| || Sbjct 46789 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 46848 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 |||| ||| || ||||| || ||||||||||| Sbjct 46849 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 46880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984454558267950