Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1353 219 8e-52 seq1314 143 5e-29 seq1038 138 2e-27 seq1181 136 7e-27 seq892 127 4e-24 >seq1353 Length=60684 Score = 219 bits (242), Expect = 8e-52 Identities = 503/751 (67%), Gaps = 20/751 (3%) Strand=Plus/Minus Query 38996 ATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctac 39055 |||||| || | ||||| || ||||| || ||| ||||||||||||||| ||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 39056 agcttgtttaattatcataattatattatttttt-gataatttatatttaatatgattcg 39114 ||||| || || | | ||| || || ||| | |||||||| || | || ||| | Sbjct 30197 AGCTTCAGCGATAATAACA-TTAACTTCTTCTTTAGCTAATTTATTTT--ACATCATT-G 30142 Query 39115 catataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTAC 39174 || || ||||| |||||||| |||||||| |||||||| || ||||| |||||||| Sbjct 30141 AGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTG 30082 Query 39175 TAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTA 39233 ||||||||| || |||||||| ||| |||||||||||||| | || ||| ||||| Sbjct 30081 AAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAA-AATGGCGCAGAAACTT 30023 Query 39234 CTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT 39293 | | ||||| || || || | | |||||||| | || || | | || ||| Sbjct 30022 CCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAA-ATT--G 29966 Query 39294 TTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTT 39353 | || || |||||| |||| ||||| | |||||||| || || ||| |||||| Sbjct 29965 TCATTATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTT 29906 Query 39354 TCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39413 ||||||||| | | Sbjct 29905 AGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAAT 29846 Query 39414 NNAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTT 39473 |||||| |||| ||||| | | |||||||||||||| |||| ||| || ||| Sbjct 29845 AAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTT 29786 Query 39474 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTC-AGATACAATACC 39532 ||||||| | | |||||| | | ||| |||| ||||||| || ||| ||||| || Sbjct 29785 GCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGA-ACAATTCC 29727 Query 39533 ATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA 39592 ||| || ||||| || ||||| | |||||| |||||||| ||| | || ||| | || Sbjct 29726 ATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAA 29667 Query 39593 ATTTTCCCAAGATTCAAGATCGTTTGATAA--ATCTACTTCTTCTATTGTCCAAAAAGAT 39650 |||||||| || | ||| || |||| ||| | ||| ||| ||||||||| || Sbjct 29666 TCTTTCCCAATCTTTCAAATC--TTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAA 29609 Query 39651 GCTACGGATTTTTTATACATTTGATATATATCAAAAT-GTTCAATGGGAA-ATAACACAT 39708 || | |||||| ||||||| |||| | | || || | |||||| |||||| || Sbjct 29608 GCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAAT 29549 Query 39709 ATCGTTTAGTAtttttttCTAATATCGGTTC 39739 | |||| | ||||| || | || ||||| Sbjct 29548 CT-GTTT-GGATTTTCTTAAAGAATTGGTTC 29520 >seq1314 Length=139336 Score = 143 bits (158), Expect = 5e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 171832 GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATAT 171891 ||| |||| ||| ||||| | || || || ||||| | ||| | || || |||||| Sbjct 38368 GTTCCATAGCACCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATAT 38427 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | ||||| || | || || |||| || |||| ||||||||| ||||| | ||| | || Sbjct 38428 TGTAATCAGAAAGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATT 38487 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 || ||||| |||||||| || |||| ||||| |||||||| || | ||| | Sbjct 38488 AATCTGGTGGAATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAG 38547 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| || |||| |||||||||||| || ||||| ||||||| ||| || | ||||| Sbjct 38548 AAGCTTCAACATCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTT 38607 Query 172072 TATT 172075 | || Sbjct 38608 TCTT 38611 >seq1038 Length=46086 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || ||| |||||||| | ||| | ||| || ||||||| |||||||| Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | | || || |||| ||| || || ||||||||||| | || || || || Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| ||||||| || || |||||| || || | ||| || | |||||| Sbjct 43949 ATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACG 43890 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATA 172078 |||| ||||| ||||| |||||||| ||||||| || || | |||||| || || Sbjct 43889 TCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTTTTA 43834 >seq1181 Length=100449 Score = 136 bits (150), Expect = 7e-27 Identities = 178/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 171836 CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 |||| ||| ||||| | || || |||||||| | ||| | ||||| ||||||| || Sbjct 74900 CATAGCACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTA 74959 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 |||||| | || || | || ||||||| ||| || ||||| || | ||| | || || Sbjct 74960 ATCTGAAAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATC 75019 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 || || ||||||||||| |||| ||||| ||| ||||| || | ||| || | Sbjct 75020 TGGAGGAATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGC 75079 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || |||| ||| || |||||||| ||||||||||| | ||| || | |||||| || Sbjct 75080 CTCAACATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTT-TT 75138 Query 172076 ATAAA 172080 |||| Sbjct 75139 TTAAA 75143 >seq892 Length=79579 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || |||||||| | || | ||||| ||||||| || || Sbjct 46894 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 46953 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| || |||| ||| || || || || | ||| | || || || Sbjct 46954 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47013 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||| |||||| ||| ||||| |||| || || | ||| Sbjct 47014 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCA 47073 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| || ||||| || ||||||||||| | ||| || | ||| Sbjct 47074 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || |||||||| | || | ||||| ||||||| || || Sbjct 47122 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 47181 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| || |||| ||| || || || || | ||| | || || || Sbjct 47182 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47241 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||| |||||| ||| || || |||| || || | ||| Sbjct 47242 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47301 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| || ||||| || ||||||||||||| ||| || | ||| Sbjct 47302 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Score = 125 bits (138), Expect = 1e-23 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || |||||||| | || | ||||| ||||||| || || Sbjct 47350 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 47409 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| || |||| ||| || || || || | ||| | || || || Sbjct 47410 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47469 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| |||| |||||| ||| || || |||| || || | ||| Sbjct 47470 GGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47529 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT--TTTATT 172075 || |||| ||| || ||||| || ||||||||||||| ||| || | ||| |||||| Sbjct 47530 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATT 47587 Score = 122 bits (134), Expect = 2e-22 Identities = 170/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 ||||| | | || |||||||||| ||| |||||||| | || | ||||| ||||||| Sbjct 46660 TTTCAAAGT-CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATT 46718 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | || || | |||| || |||| ||| || || || || | ||| | || Sbjct 46719 GTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTA 46778 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || || |||||||| |||| |||||| ||| || || |||| || || Sbjct 46779 ATCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGA 46838 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || |||| ||| || ||||| || ||||||||||| | ||| || | ||| Sbjct 46839 AGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905113179258600