Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1353 159 1e-33 seq946 141 3e-28 seq861 136 1e-26 seq1244 98.7 3e-15 seq281 93.3 1e-13 seq1101 87.8 5e-12 seq148 86.0 2e-11 >seq1353 Length=60684 Score = 159 bits (176), Expect = 1e-33 Identities = 407/608 (67%), Gaps = 15/608 (2%) Strand=Plus/Plus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAG 133129 || || ||||||||||||||||| || | | | || ||| | ||||| |||||| | Sbjct 29544 AACAGATTTGTTATGTTCCCAATAAAATATAATAAAATATGGGAAATGTACAAAAAAGAA 29603 Query 133130 CAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAA 133189 | | || ||||||||| || ||| | ||| | | |||| | |||||| Sbjct 29604 CTCGCTTCATTTTGGACAGCAGACGAAATTGATCTTTATTAAGATTTGAAAGATTGGGAA 29663 Query 133190 GCCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAG 133248 | |||| | || | ||| |||||| |||| | || || |||||||| || Sbjct 29664 AGATTGACTGATGGCGAGAGACACTTTATTAAGTATGTTCTT-GCATTTTTTGCAGCTTC 29722 Query 133249 TGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 ||||| |||||||| |||||||||| ||| | |||||| | |||||| || | | Sbjct 29723 AGATGGAATTGTTCTAGAAAATTTAGCTGAATAA--TTTATGTGTGAAGTTTAAATTCCA 29780 Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 ||||| | || || ||||| | | || || ||||||||||| ||||| || ||| Sbjct 29781 GAAGCAAGAGCTTTCTATGGATTTTAAATAGCTATGGAAAATATTCATTCCGAAACTTAT 29840 Query 133367 TCTACTCTAATTGATACTTACATCAAAGAT-ACCGTCCAGAAGCACAAACTATTCAACGC 133425 ||| |||| |||||||| || |||||| | | | ||| | || || || || Sbjct 29841 TCTTTATTAATAGATACTTATATAAAAGATGATAATGAAAAAG-AGTTTCTTTTTAAAGC 29899 Query 133426 CATTAGC-GAATTTCCTTGTATTAAA-AAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 || | ||| | | |||| |||| || ||| || | |||||| | |||||||| | Sbjct 29900 --TTGTCTAAATATTCCTGTAATAAATAAAAAAGCTTAATGGGCTTTAAAATGGATTAAT 29957 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 | || || | ||| ||| |||| | ||||| ||||| | | || || || || Sbjct 29958 AATAA---TGACAATTTCGCTTCTCGATTAGTTGCATTTGCAGCTATTGAAGGAATCTTC 30014 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 |||||||| |||||| | ||||||||||||||||| | | | | ||||| | Sbjct 30015 TTCAGTGGAAGTTTCTGCGCCATTTTTTGGCTTAAAAAAAGATCTTTAATGCCTGGTTTA 30074 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 |||||| || ||| | || ||||| ||||| | | | || || || ||||| ||| Sbjct 30075 ACTTTTTCAAATGAATTAATATCAAGAGACGAAGGATTACATACAGATTTTGCTTGTTTG 30134 Query 133664 CTTCACTC 133671 ||| |||| Sbjct 30135 CTTTACTC 30142 >seq946 Length=104729 Score = 141 bits (156), Expect = 3e-28 Identities = 284/416 (68%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | |||| || ||| | || | || |||||||||||| || Sbjct 52712 AAATCCATCCATTTCTACCAAAAGTTAATTCAAAGTATTATCTCTTTCATCATTT---CC 52768 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | | | | || ||||||| |||| | |||||| ||||| ||||| ||||| Sbjct 52769 TCCTTATTTGTTC---TC---CCTTTTTCTACCTATAGCATCGATTTCATCAATAAAAAT 52822 Query 289059 CACACACGGAGAATTTTGTCT---CGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | | | | |||| || | | ||| ||||| |||||||| | | ||| || Sbjct 52823 TA-TCGCAGGTTACTTTGCCTTTGCCTATTTG--AATAAATCTCTTACCCTAGCTGCACC 52879 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 | ||| ||| ||||||| ||||| ||||| | || || | || |||| || || Sbjct 52880 TACACCGACAAACATTTCCACAAAATCAGACCCTGAGACATAAAAAAATGGCACTCCAGC 52939 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| || || ||| | || | ||| ||||| || || || || ||||| | ||| || Sbjct 52940 TTCCCCAGCACATGCTTTTGCTAAAAGAGTCTTTCCAGTCCCCGGAGGTCCATATAAGAG 52999 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 | | || || |||| ||||||||| | |||||||||| || | |||||||| || Sbjct 53000 AGCCCCTTTAGGTAATTTTGCCCCTAAATCTTTATATTTCTTCGGTTTTTTTAAAAAATC 53059 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 |||| ||| | | ||| ||||| |||||||| | || |||||||| ||||| Sbjct 53060 GACAAATTCTTATATTTCTTATTTGGCCTCATCTTAGCCGGCTACATCTTTAAAAG 53115 >seq861 Length=133231 Score = 136 bits (150), Expect = 1e-26 Identities = 489/755 (65%), Gaps = 11/755 (1%) Strand=Plus/Plus Query 155588 AATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCAC 155646 |||||| |||| ||||||||| ||| | || | || | | | ||||| | ||| ||| Sbjct 47984 AATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAG-TATATTCAATAATTTCAG 48042 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 |||| || ||||| | || || || ||||| | | ||| ||| || ||||||| Sbjct 48043 TACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAG 48102 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||| || |||| || || || ||||| || || || | | || | ||| | | ||| Sbjct 48103 CATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCC 48162 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG--CCTTCCGACTCATATTTCATATA 155824 | || || | ||| |||||| ||| || | || ||||| ||||||||| || Sbjct 48163 AAAGTTCTCTGGCTTTAATT--CTTTTTCTTCCTTTTCCTTCTCTTTCATATTTCTCGTA 48220 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 || || | || || || || |||| | || || | || ||||| | Sbjct 48221 GAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATTAGGGCACAT 48280 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 || | |||| || || | || || | |||||| | |||| ||| | || Sbjct 48281 CAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCCATAACGC 48340 Query 155945 ATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 ||||||||| || ||||| ||||| ||| || | || ||||| || || | ||| | Sbjct 48341 ATAGAAAAGATCTCTTGCTCTTTG-CTCTTCTTTTCCATGATTTTTTTTTAATTATAAAA 48399 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGC 156063 | || || ||||| ||| || |||| ||| |||||||| || || || |||| Sbjct 48400 AATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGC 48459 Query 156064 CAC--CCTGA-TCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 ||| ||| | |||||||| | || || | ||| || || || ||| |||||||| | Sbjct 48460 CACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAATAATTC 48519 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 |||| ||| ||||| ||||| | ||||| | | | || | | |||||||| Sbjct 48520 CATTAGAATGTCCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTATGAACTG 48579 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 | || || || || | | ||||| ||| ||| |||| || | |||| | | Sbjct 48580 AAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTATCATATA 48639 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | |||||||| |||||| | ||| | | || | || ||| | | ||| || Sbjct 48640 TGCCTTCAATTGAATCACTCTACATAGTCAATAAGAAACAACTACTCATCTAAGGGTTTG 48699 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | | ||| ||||| |||| ||||| ||||||||| Sbjct 48700 GAGATCCTGCGTTAAATAAAGTAGGAGTTGCATGA 48734 >seq1244 Length=303348 Score = 98.7 bits (108), Expect = 3e-15 Identities = 209/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 289038 ATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTC 289097 ||| ||||| ||||| || || | | | |||| |||| | || || ||||| || Sbjct 216342 ATCTATTTCATCAATAAATATTATAGAAGGAGCTTTTTCACGAGCTTTTTTGAATAACTC 216283 Query 289098 TCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG 289157 ||||| | ||||||| ||| ||| |||| || ||||||||||| || | | Sbjct 216282 TCTTATCCTCATAGCTCCAACACCTACAAACATCTCATCAAATTCAGAACCGTTTTTGTA 216223 Query 289158 AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217 || |||| | ||||| ||||||| ||| || || | || || || ||||| || Sbjct 216222 AAAAAATGAACAACCAGCTTCTCCTGCTAATGCTCTTGCTAATAGAGTTTTTCCTGTCCC 216163 Query 289218 AGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTC 289277 |||| ||| |||| || | ||||| || | |||||| |||||| | |||||| | Sbjct 216162 AGGTTATCCTACTAAAAGTATACCCTTAGGAAGTTTTGCTCCAGCATCATGATATTTTTT 216103 Query 289278 AGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGC 289337 ||| | |||||| | || || | ||| | ||| | ||| |||||| |||| Sbjct 216102 TGGGTTTTTTAAATAATCAACTAATTCTAATAATTCTTCTTTAAACTCATCTATTCCTAT 216043 Query 289338 TACATCAGCAAA 289349 |||||| | ||| Sbjct 216042 TACATCTGAAAA 216031 >seq281 Length=8117 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| |||| |||||||| ||||||||||| ||||| | | |||| || |||| | | Sbjct 6395 CTTTTTCTACCTACAGCATCTATTTCGTCAATAAAAATTATAGACGGTGATTTTTCTTTT 6336 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||||| || | || | || ||||| | ||||| ||||||||||||| Sbjct 6335 GCTTATTTAAATAAATCACGAACTCTAGAAGCTCCTACTCCAACGAACATTTCTACAAAA 6276 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 |||||| | || | || |||| ||| |||||| ||||| Sbjct 6275 TCAGAACCTGAAATAAAAAAAAATGGTACTCCTGCTTCTCCTGC 6232 >seq1101 Length=99368 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||||| ||||||||||| |||||||| || || || | | ||||| || | | | Sbjct 44587 CTTTTTTTTCCAACAGCATCTATTTCGTCTATAAATATTATTGAAGGAGATTTCTCTTTT 44646 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || ||||| |||||||| || |||||||| | || || ||||||||||||| Sbjct 44647 GCTTTTTAGAATAAATCTCTTACCCGAGATGCTCCTACGCCTACGAACATTTCTACAAAA 44706 Query 289141 TCA 289143 ||| Sbjct 44707 TCA 44709 >seq148 Length=22778 Score = 86.0 bits (94), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 408937 TTAA-AAAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTG 408995 |||| |||| || || ||||||||||||||| || ||||||||||||| || |||| | Sbjct 22174 TTAATAAAGCTCCGATAGCTCAGTTGGTTAGAGCGTGGGTCTTATGAGCCCAAGGTCGCG 22115 Query 408996 GGTTCGAGTCCCACATAGAACAtttttttAAA 409027 ||||||| ||| | | || |||||||||||| Sbjct 22114 GGTTCGACCCCCGCTTGGAGCATTTTTTTAAA 22083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779564093729