Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1257 116 5e-21 seq1151 113 6e-20 >seq1257 Length=94337 Score = 116 bits (128), Expect = 5e-21 Identities = 271/403 (67%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 172410 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 172469 ||| |||| ||||| || ||| || ||| ||||| ||||| ||| ||||| | ||| Sbjct 34145 TGGTTTATAAAAGGATCCACTAATAGTAAATTATTAAGTGATAAAGGGATTAAAATATGG 34086 Query 172470 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 172529 ||| || || | | | |||||||||| || || ||| | || |||| ||| Sbjct 34085 GATGGAAACGGAAGTAGATAGTTTTTAGATTCATTAGGTTTTCACAATAGGGAAGAGGGT 34026 Query 172530 GATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGT 172589 |||||||| ||| ||||||||||| ||||||| ||| || ||| | ||| || | | Sbjct 34025 GATTTAGGACCAGTTTATGGATTTTAATGGAGGCATTTTGGTGCTTAGTATGCAGATTTT 33966 Query 172590 GATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTACAA 172649 | || ||||| | ||| ||||| | || ||||| || |||| |||| || || Sbjct 33965 AAGACTGATTATAAAGGTAAAGGAATAGATTAATTATAAGAACTTATTGATACAATAAAA 33906 Query 172650 AACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCAACTTGA-TAA 172708 || || || || ||| |||| | || | || |||||||||| |||| | || Sbjct 33905 AAAAATCCTGATAGTCGAAGATTAATATTAAATGCTTGGAATGTA-AAAGACTTAAGTAT 33847 Query 172709 AATGGTTCTTCCTCCTTGCCAT-ACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCT 172767 ||||| | | || || || ||| | ||| |||||||| | ||| ||| || | Sbjct 33846 AATGGCTTTACCACCATGTCATGTAATGAGC-TAATTTTAT---ATAAATAAAGGAAATT 33791 Query 172768 TAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGG 172810 || ||| | | ||| |||||||| |||| | ||||| || Sbjct 33790 TAAGTTGCATGATGTATTAAAGATCATGTGATATGGGATTAGG 33748 >seq1151 Length=23207 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 ||||||||||||||| || ||||| ||||| || ||| |||| | ||||||||| || Sbjct 9842 AAGGTTGCTCAATTATAAGGTTATGTAGCAGAGCATTCAGCTTATCATCATGGTGAATAA 9783 Query 166013 AATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT-AGC 166071 ||| | |||| ||||| || | || || ||||||| || | ||||| || ||| Sbjct 9782 TCATTAGCTTAAACAATAATAAATATGGCTTAAAATTTTGTAGGAGCTAATAACATTAGC 9723 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 ||| | |||||| || | |||||||| ||| ||||||| ||||| |||| | Sbjct 9722 -TTATTAGAACCTATCGGATAGTTTGGTACAAGAAATCAAGGAGGAAAAGAACATGCTTC 9664 Query 166132 ATCAAGATATATTTATACCAA 166152 ||||||||||| | |||||| Sbjct 9663 TTCAAGATATATATTTACCAA 9643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632473653355960