Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq892 172 9e-38 seq1181 170 3e-37 seq1314 161 2e-34 >seq892 Length=79579 Score = 172 bits (190), Expect = 9e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||||||||| ||||||||||| ||| | ||||| ||| | || Sbjct 47122 TGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCG 47063 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| |||||| || ||||||||| ||||| || ||| || Sbjct 47062 ACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAAT 47003 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || ||||| ||| ||||||| || ||||| | | || || |||| Sbjct 47002 AAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATA 46943 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||| || |||||||||| || |||||||||| |||| ||||| || Sbjct 46942 TTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTT 46885 Score = 168 bits (186), Expect = 1e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||||||||| ||||||||||| ||| | ||||| ||| | || Sbjct 47350 TGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCG 47291 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || ||| |||||| || ||||||||| ||||| || ||| || Sbjct 47290 ACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAAT 47231 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || ||||| ||| ||||||| || ||||| | | || || |||| Sbjct 47230 AAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATA 47171 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||| || |||||||||| || |||||||||| |||| ||||| || Sbjct 47170 TTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTT 47113 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||||||||| ||||||||||| ||| | ||||| ||| | || Sbjct 47578 TGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCG 47519 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || ||| |||||| || |||||||| ||||| || ||| || Sbjct 47518 ACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAAT 47459 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || ||||| ||| ||||||| || ||||| | | || || |||| Sbjct 47458 AAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATA 47399 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||| || |||||||||| || |||||||||| |||| ||||| || Sbjct 47398 TTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTT 47341 Score = 156 bits (172), Expect = 7e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||||||||| ||||||||||| ||| | ||||| ||| | || Sbjct 46894 TGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCG 46835 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || ||| |||||| || |||||||| ||||| || ||| || Sbjct 46834 ACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAAT 46775 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || || ||||| ||| ||||||| || ||||| | | || || |||| Sbjct 46774 AAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATA 46715 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||||| || |||||||||| ||| || | |||||||| Sbjct 46714 TTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGG 46669 >seq1181 Length=100449 Score = 170 bits (188), Expect = 3e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 || |||| ||| | |||||||||||||| |||||||| ||| | ||||| || ||| | Sbjct 75132 TGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCATC-C 75074 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| | ||| ||||||| ||| ||||| || |||||||| ||||| || ||| || Sbjct 75073 GATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGATTAA 75014 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||| || ||||| || ||| |||| || ||| ||||| | ||||||| ||| Sbjct 75013 TAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTACAAT 74954 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || |||||||||| ||| |||||||||| || |||||||||||||| Sbjct 74953 ATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGGT 74906 >seq1314 Length=139336 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| |||||||||||||| |||||| | ||||| ||| | | Sbjct 38604 TGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTCTG 38545 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| |||||||||| ||||| || || ||||| |||||||| ||| || Sbjct 38544 ATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTAAT 38485 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || |||||| ||||||| || ||||| | | ||||| |||| Sbjct 38484 AAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTACAATA 38425 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | |||| ||||| ||| ||||||| || || |||||||||||||| Sbjct 38424 TTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGGT 38378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786146578779640