Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1181 107 1e-18 seq1038 107 1e-18 >seq1181 Length=100449 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | || || ||||| || ||||||||||||| ||| || ||||| | | Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | || ||| || ||| |||| | ||||| | ||| || ||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||||| |||||| | ||| ||| |||| | | || || || || Sbjct 75027 ATTCCTTCTTTGTCTT-AAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAAC 75085 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || ||||| || ||||| ||||| || || || | |||||| Sbjct 75086 ATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTT 75136 >seq1038 Length=46086 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || || || || |||| ||| || ||||| | || || | ||| || Sbjct 44051 ACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCCATCTTCT 43992 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | || ||| || || | || ||||||| | ||| || |||||||| || || |||| Sbjct 43991 AATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTTATCTTA- 43933 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | ||| || |||| | | |||||| |||||| || | || |||||||| Sbjct 43932 AATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAATAGTTTT 43873 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||||||||||||||| || | |||||| Sbjct 43872 TCCAGTTAAGGTTTTAACAAAAATTTACATTTT 43840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385209730469397