Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1257 141 1e-28 seq569 102 1e-16 seq1151 95.1 2e-14 >seq1257 Length=94337 Score = 141 bits (156), Expect = 1e-28 Identities = 277/405 (68%), Gaps = 11/405 (3%) Strand=Plus/Minus Query 168537 TGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 168596 ||| |||||||||| || ||| || ||| ||||| ||||| ||| ||||| | ||| Sbjct 34145 TGGTTTATAAAAGGATCCACTAATAGTAAATTATTAAGTGATAAAGGGATTAAAATATGG 34086 Query 168597 AACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGT 168656 | | || || | | | |||||||||| || |||||| | | || |||| ||| Sbjct 34085 GATGGAAACGGAAGTAGATAGTTTTTAGATTCATTAGGTTTTCACAATAGGGAAGAGGGT 34026 Query 168657 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGT 168716 |||||||| ||| ||||||||||| ||||||| ||| || ||| | ||| || | | Sbjct 34025 GATTTAGGACCAGTTTATGGATTTTAATGGAGGCATTTTGGTGCTTAGTATGCAGATTTT 33966 Query 168717 GATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTACAC 168776 | || ||||| | || ||||| |||| ||||| || ||| |||| || | Sbjct 33965 AAGACTGATTATAAAGGTAAAGGAATAGATTAATTATAAGAACTTATTGATACAATAAAA 33906 Query 168777 AACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTTGA-TAA 168835 || ||||| || | | ||||| || || | ||| |||| ||||| | |||| | || Sbjct 33905 AAAAATCCTGATAGTCGAAGATTAATATTAAATGCTTGGAATGTA-AAAGACTTAAGTAT 33847 Query 168836 AATGGTTCTTCCCCCTTGTCACACTTTAGTG---CAATTTTATGTAAGGAAAAAATCAAT 168892 ||||| | | || || ||||| | || || |||||||| || || ||| || Sbjct 33846 AATGGCTTTACCACCATGTCA---TGTAATGAGCTAATTTTATATA---AATAAAGGAAA 33793 Query 168893 CTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGG 168937 ||| ||| | ||||| |||||||| |||| | |||||||| Sbjct 33792 TTTAAGTTGCATGATGTATTAAAGATCATGTGATATGGGATTAGG 33748 >seq569 Length=47479 Score = 102 bits (112), Expect = 1e-16 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 193019 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTAT 193078 |||||| ||||||||||| ||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 24959 TGGTATAAATGCTATTGTAGCTATTGCTTGCTTTACTGGTTATAATTAAGAAGATTCTAT 24900 Query 193079 TAT-TTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 193115 ||| | || ||||| ||||||||| ||||| |||||| Sbjct 24899 TATAATGAACTAAAG-TTCTATTGACAGAGGTTTATTT 24863 >seq1151 Length=23207 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 ||||||||||||||| || ||||| || || || ||| ||| | || |||||| || Sbjct 9842 AAGGTTGCTCAATTATAAGGTTATGTAGCAGAGCATTCAGCTTATCATCATGGTGAATAA 9783 Query 163061 AATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT-AGC 163119 ||| | |||| ||||| || | || || ||||||| || | ||||| || ||| Sbjct 9782 TCATTAGCTTAAACAATAATAAATATGGCTTAAAATTTTGTAGGAGCTAATAACATTAGC 9723 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 ||| | |||||| || | |||||||| ||| ||||||| ||||| ||| | Sbjct 9722 -TTATTAGAACCTATCGGATAGTTTGGTACAAGAAATCAAGGAGGAAAAGAACATGCTTC 9664 Query 163180 ATCAAGATATATTTATACCAA 163200 ||||||||||| | |||||| Sbjct 9663 TTCAAGATATATATTTACCAA 9643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635161585584760