Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1257 172 7e-38 seq1151 86.0 8e-12 >seq1257 Length=94337 Score = 172 bits (190), Expect = 7e-38 Identities = 304/435 (70%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 180408 TTTATAAAAATAT-TCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT 180466 |||| || ||||| | |||| || ||| | ||| | || ||||| | || ||| ||| Sbjct 34175 TTTAAAACAATATATATTAAGGAGTTAATTTGGTTTATAAAAGGATCCACTAATAGTAAA 34116 Query 180467 TTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGAT 180526 || |||| ||||| || ||||| | ||| ||| || || | ||||||||||| Sbjct 34115 TTATTAAGTGATAAAGGGATTAAAATATGGGATGGAAACGGAAGTAGATAGTTTTTAGAT 34056 Query 180527 TCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGG 180586 || | || ||||| | | |||| ||||||||||||||| ||||||||||| ||||| Sbjct 34055 TCATTAGGTTTTCACAATAGGGAAGAGGGTGATTTAGGACCAGTTTATGGATTTTAATGG 33996 Query 180587 AGACATGCAGGAGCTCAATATATTGACTGTGATACCAACTATATCGGGCAAGGTATAGAC 180646 || ||| || ||| | ||| || | | | || | |||| || |||| ||||| Sbjct 33995 AGGCATTTTGGTGCTTAGTATGCAGATTTTAAGACTGATTATAAAGGTAAAGGAATAGAT 33936 Query 180647 CAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATA 180706 ||||| || |||| || || |||||||| ||||| || | |||||| |||| || Sbjct 33935 TAATTATAAGAACTTATTGATACAATAAAAAAAAATCCTGATAGTCGAAGATTAATATTA 33876 Query 180707 GATAGTTGGAATGTATCACAATTACCAG-ATA-TGGCTCTTCCACCATGTCACTGT-TTG 180763 || |||||||||| | | ||| || ||| ||||| | ||||||||||| ||| || Sbjct 33875 AATGCTTGGAATGTAAAAGACTTA--AGTATAATGGCTTTACCACCATGTCA-TGTAATG 33819 Query 180764 GTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCA 180823 ||||||| || ||||||| ||||| |||| ||||| ||||||| Sbjct 33818 AGCTAATTTTA---TATAAATAAAGGAAATTTAAGTTGCATGATGTATTAAAGATCATGT 33762 Query 180824 GATTTAGGATTAGGT 180838 ||| | ||||||||| Sbjct 33761 GATATGGGATTAGGT 33747 >seq1151 Length=23207 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 172889 AAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACAA 172948 ||||||||||| || ||||| | ||||| || | | |||| | ||||||||| | Sbjct 9842 AAGGTTGCTCAATTATAAGGTTATGTAGCAGAGCATTCAGCTTATCATCATGGTGAA-TA 9784 Query 172949 AACCTTTG-TGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | || | | |||| |||||||| | || | |||||||||| | |||||||| | Sbjct 9783 ATCATTAGCTTAAACAATAATAAATATGGCTTAAAATTTTGTAGGAGCTAATAACATTAG 9724 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 ||| | ||||| || |||||||||| ||| | ||||||| ||||| || | Sbjct 9723 CTTATTAGAACCTATCGGATAGTTTGGTACAAGAAATCAAGGAGGAAAAGAACATGCTTC 9664 Query 173068 ATCAAGGTATATTTATACTAA 173088 ||||| ||||| | ||| || Sbjct 9663 TTCAAGATATATATTTACCAA 9643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655263478753000