Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1257 113 6e-20 seq1151 107 2e-18 seq569 93.3 5e-14 seq1131 82.4 1e-10 >seq1257 Length=94337 Score = 113 bits (124), Expect = 6e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 171622 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 171681 ||| |||| ||||| || ||| || ||| ||||| ||||| ||| ||||| | ||| Sbjct 34145 TGGTTTATAAAAGGATCCACTAATAGTAAATTATTAAGTGATAAAGGGATTAAAATATGG 34086 Query 171682 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 171741 ||| || || | | | |||||||||| || || ||| | || |||| ||| Sbjct 34085 GATGGAAACGGAAGTAGATAGTTTTTAGATTCATTAGGTTTTCACAATAGGGAAGAGGGT 34026 Query 171742 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGT 171801 |||||||| ||| ||||||||||| ||||||| ||| || ||| | ||| || | | Sbjct 34025 GATTTAGGACCAGTTTATGGATTTTAATGGAGGCATTTTGGTGCTTAGTATGCAGATTTT 33966 Query 171802 TATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTACAA 171861 | || ||||| | ||| ||||| | || ||||| || |||| |||| || || Sbjct 33965 AAGACTGATTATAAAGGTAAAGGAATAGATTAATTATAAGAACTTATTGATACAATAAAA 33906 Query 171862 AACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTA 171906 || || || || ||| |||| | || | || |||||||||| Sbjct 33905 AAAAATCCTGATAGTCGAAGATTAATATTAAATGCTTGGAATGTA 33861 >seq1151 Length=23207 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 165156 TTTTATTAAA--GTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACAT 165213 |||||| ||| |||||||||||| || ||||| ||||| || ||| |||| | ||| Sbjct 9851 TTTTATAAAAAGGTTGCTCAATTATAAGGTTATGTAGCAGAGCATTCAGCTTATCATCAT 9792 Query 165214 GGTGAACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAAT 165273 |||||| || ||| | |||| ||||| || | || || ||||||| || | ||| Sbjct 9791 GGTGAATAATCATTAGCTTAAACAATAATAAATATGGCTTAAAATTTTGTAGGAGCTAAT 9732 Query 165274 AATAT-AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGA 165332 || || ||| ||| | |||||| || | |||||||| ||| ||||||| ||||| Sbjct 9731 AACATTAGC-TTATTAGAACCTATCGGATAGTTTGGTACAAGAAATCAAGGAGGAAAAGA 9673 Query 165333 TTCTGCGGCATCAAGATATATTTATACCAA 165362 ||| | ||||||||||| | |||||| Sbjct 9672 ACATGCTTCTTCAAGATATATATTTACCAA 9643 >seq569 Length=47479 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 192572 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAGACAGTAT 192631 |||||| ||||||||||| ||||| ||||||| |||||| ||||| ||||||| ||| Sbjct 24959 TGGTATAAATGCTATTGTAGCTATTGCTTGCTTTACTGGTTATAATTAAGAAGATTCTAT 24900 Query 192632 TAT-TTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||| | || ||||| ||||||||| ||||| |||||| Sbjct 24899 TATAATGAACTAAAG-TTCTATTGACAGAGGTTTATTT 24863 >seq1131 Length=82616 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 50319 AGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAG 50378 ||| || ||| ||| || || ||| | |||| || ||||||||| |||||| | Sbjct 53435 AGACGGCGATTTTGTCCTTTTTAATCGATAACCTACCCTTCATAAAATGTCTATGATGGG 53494 Query 50379 TTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGC 50438 ||||| || || |||| | || || | | |||||||| || | | | Sbjct 53495 CCACAAAGTAAAGATATTACCATGGAGTACTTTCAGATTGAATTTATCTGTTTGCACGCC 53554 Query 50439 ATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGC 50498 |||||||||||||||||||| |||||||||||||| ||||||||| || |||| | Sbjct 53555 TTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTTAAAGCTATGAGAC 53614 Query 50499 TACTGCTGAATTA 50511 || |||||| || Sbjct 53615 TAGGGCTGAAATA 53627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628515353157120