Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1314 188 1e-42 seq1181 170 4e-37 seq1038 170 4e-37 seq892 158 2e-33 seq29 105 1e-17 seq939 84.2 4e-11 >seq1314 Length=139336 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | || ||| || || ||||| ||||| || | ||||| |||||||| Sbjct 38378 ACCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGA 38437 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| |||||||||| || ||| ||||| || || ||||||| || |||||| || Sbjct 38438 AAGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGG 38497 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| |||| ||| ||||| |||||||||||||| | |||| || ||| || Sbjct 38498 AATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAAC 38557 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || ||||| || || || || || || | |||| Sbjct 38558 ATCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATT 38606 >seq1181 Length=100449 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | || |||||| || ||||| |||||||| | ||||| ||||| || Sbjct 74906 ACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGA 74965 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| | || |||||| ||||| || ||||||| || ||||||||| Sbjct 74966 AAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGG 75025 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || |||| ||| || ||||| ||||||||||| | ||| | || || Sbjct 75026 AATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAAC 75085 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || ||||| || || || ||||| || || || || || || | |||| || Sbjct 75086 ATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTT 75137 >seq1038 Length=46086 Score = 170 bits (188), Expect = 4e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || | | |||||| || ||||| || || || | ||||| ||||| || Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||||| || |||||| || || |||| ||||| || ||||||||| Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||||| |||||| |||||||| |||||||| | |||| || |||||| Sbjct 43949 ATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACG 43890 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 || || || || || || || || || || || ||||| || | |||| || | | ||| Sbjct 43889 TCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTTTTATTT 43831 >seq892 Length=79579 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| ||||| || | || ||||| || || || |||||||| | ||||| || | Sbjct 46892 ACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGT 46951 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| ||| |||| |||||||||| || |||||| || ||||| ||||||| || ||||| Sbjct 46952 CAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTG 47011 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || ||||| ||||||| || || ||||| ||||||||||| | || || || Sbjct 47012 GGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTT 47071 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || || || || || || || || || || | ||| Sbjct 47072 CAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 >seq29 Length=52844 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 143945 TACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGA 144004 ||||||| || |||||||| |||||| || | || || || || |||||||| Sbjct 37057 TACAGATGAAAATGAGTGGGGATAATGGAAATAACGAGGAGACCCTGTTTTACATATAGA 37116 Query 144005 ACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAA 144064 | || | ||||||| || ||||| ||||| | || ||| |||| ||||| |||||||| Sbjct 37117 TTTAAGAAAATGGGCTCATATTTTTGTTATAACCCCTTTATCAGCTAATACTTTAGCAAA 37176 Query 144065 AATAGCCAATGGTATATGCGATAATTTACTA 144095 |||| | ||||| ||||| ||||||||| || Sbjct 37177 AATAACAAATGGAATATGTGATAATTTATTA 37207 >seq939 Length=68161 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50775 ATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTAC 50834 ||||||||||| ||| |||| | |||||||| ||| ||| || |||||||| ||||| Sbjct 31840 ATTAAATAATAATACATTTACTTCTCCTCTATAATCTTCGTCTATAACACCAGCTCCTAC 31781 Query 50835 GTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTA 50880 || ||||||| || |||| || |||||||| || ||| || || Sbjct 31780 ATCAATAAAATTCTTCCAAGCTAGACCTGATCTTGGTGCTTTTTTA 31735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981801826823763