Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq861 251 2e-61 seq1353 152 1e-31 seq1131 129 1e-24 seq470 102 2e-16 seq534 93.3 1e-13 seq909 86.0 1e-11 seq989 84.2 5e-11 >seq861 Length=133231 Score = 251 bits (278), Expect = 2e-61 Identities = 417/597 (70%), Gaps = 5/597 (1%) Strand=Plus/Minus Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 |||||| |||||||| || |||||| | | ||| || |||| | || ||||| | | Sbjct 48656 TGATTCAATTGAAGGCATATATGATACATTGAAATAATGTGCTTTAATATCTAAGAGTGC 48597 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 |||||||| ||| || |||||| |||| | || ||| |||| | | | Sbjct 48596 GGGAGGAATAGGTGTTTCAGTTCATAATATAAGATCTTAAGATAGTTATATTAGAGGAAC 48537 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || || ||| | |||| || |||| ||||||| ||| || || || || || | ||| Sbjct 48536 TAATGGACATTCTAATGGAATTATTCCGATGTTAAAAGTGTTTAATGATACAGCCAGATA 48477 Query 110726 TGT-GAATCA--AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| || | | |||||| || ||||| || ||||||||||| ||| | ||||||||||| Sbjct 48476 TGTAGACTAAGGAGGTGGCAAAAGAAAAGGATCATTTGCTATATATTTGGAACCTTGGCA 48417 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 | | ||| | || || || ||| || | |||||||| ||| ||||| |||||||| Sbjct 48416 TGCTGATGTTTTCGATTTTTTATAATTAAAAAAAAATCATGGAAAAGAAGAGCAAAGAGC 48357 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | | ||| | || ||||| | |||||| | ||| | || |||| | | ||| | | | Sbjct 48356 AAGAGATCTTTTCTATGCGTTATGGATTCCTGATATTTTTATGAGAAGAGTTATTGCAGA 48297 Query 110903 TGG-CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 || ||| ||| || | ||||| ||| || | | ||| || ||||||| | ||| Sbjct 48296 TGAACAT-TGGACTTTGATGTGCCCTAATGAATGTTTAGGTTTACCTGATGTTTGGGGAG 48238 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTC 111021 |||| |||||| | || ||||| |||||||||| |||||| || | ||| |||| Sbjct 48237 AAGAATTTGAAAAACTCTACGAGAAATATGAAAGAGAAGGAAAAGGAAGAAAAAGAATTA 48178 Query 111022 CAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATA 111081 ||| |||||||||| | || |||| || || | ||||||||||||||||||| Sbjct 48177 AAGCCAGAGAACTTTGGCAAGATATTATTGATTCTTAAATAGAAACTGGAACTCCTTATA 48118 Query 111082 TTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 | || ||||||||| | |||| | ||| |||| || ||||| || || |||| Sbjct 48117 TGTTATATAAAGATGCTTGTAATAGAAAAAGTAATTAATAAAATTTGGGGACTATTA 48061 >seq1353 Length=60684 Score = 152 bits (168), Expect = 1e-31 Identities = 378/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Plus Query 131576 GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTT-ATTAATTT 131634 ||||||||||| || || | ||||| |||||| | |||||| | | | | |||||| Sbjct 29700 GTTCTTGCATTTTTTGCAGCTTCAGATGGAATTGTTCTAGAAAATTTAGCTGAATAATTT 29759 Query 131635 CATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGA 131694 || ||| || | ||||| |||| || | | ||||| |||| || ||| | || Sbjct 29760 -ATGTGTGAAGTTTAAATTCCAGAAGCAAGAGCTTTCTATGGATTTTAAATAGCTATGGA 29818 Query 131695 ATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGA 131754 | ||||||| ||| | ||||| ||||| || || | | | | ||| |||| |||| Sbjct 29819 AAATATTCATTCCGAAACTTATTCTTTATTAATAGATACTTATATAAAAGATGATAATGA 29878 Query 131755 TAAAAATAAATTATTTGATGCTGTAAATAAAT-TTCCTGCAATTAAAAAGAAAGCAGAAT 131813 ||| | | ||| | ||| | ||||| |||||| ||| || || ||||| ||| Sbjct 29879 AAAAGAGTTTCTTTTTAAAGCT-TGTCTAAATATTCCTGTAATAAATAAAAAAGCTTAAT 29937 Query 131814 GGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTG 131873 ||||| | ||||||||| | || || | ||||| || | || | || || |||| Sbjct 29938 GGGCTTTAAAATGGATTAATAATAATGAC---AATTTCGCTTCTCGATTAGTTGCATTTG 29994 Query 131874 CTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGC 131933 | | ||||||| || ||||| || |||||| || || ||||||||||| || Sbjct 29995 CAGCTATTGAAGGAATCTTCTTCAGTGGAAGTTTCTGCGCCATTTTTTGGCTTAAAAAAA 30054 Query 131934 GTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGC 131993 | || |||||||| | | || || ||| |||| || || ||||| |||| ||| | Sbjct 30055 GATCTTTAATGCCTGGTTTAACTTTTTCAAATGAATTAATATCAAGAGACGAAGGATTAC 30114 Query 131994 ATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG----ATAAACTTGATGAAAAT 132049 |||| || |||||| || | || || || || ||||| | | | || | Sbjct 30115 ATACAGATTTTGCTTGTTTGCTTTACTCAA----TGATGTAAAATAAATTAGCTAAAGAA 30170 Query 132050 AATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCT 132109 | |||| |||| ||||| ||||| || || || || |||||| | |||||| Sbjct 30171 GAAGTTAATGTTATTATCGCTGAAGCTGTTGAAATTGAAAAAGAATTTATTTCTGAAGCT 30230 Query 132110 TTGCCTTGCAATTTGATTGGGATGAAT 132136 || ||| | || |||||||||||| Sbjct 30231 TTACCTGTTGAATTAATTGGGATGAAT 30257 >seq1131 Length=82616 Score = 129 bits (142), Expect = 1e-24 Identities = 128/163 (79%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| || || || ||| | |||| | || ||||||||||||||||||| || ||| Sbjct 53442 GATTTTGTCCTTTTTAATCGATAACCTACCCTTCATAAAATGTCTATGATGGGCCACAAA 53501 Query 305384 GTCAAAGTATTATC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAA 305442 || || ||||| | |||| | || || |||| ||| || || ||| ||||||||||| Sbjct 53502 GTAAAGATATTACCATGGAGT-ACTTTCAGATTGAATTTATCTGTTTGCACGCCTTATAA 53560 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| |||||||||||||||||||||||| ||||||| ||| || Sbjct 53561 TGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTTAA 53603 >seq470 Length=120446 Score = 102 bits (112), Expect = 2e-16 Identities = 260/383 (68%), Gaps = 22/383 (6%) Strand=Plus/Plus Query 167201 AAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATC 167260 || ||||| ||| |||| | ||| || || | |||||| | ||||| |||||| Sbjct 102650 AAGTATTTAAAAGCTGCACATTAAACTTTCATCTACACTCATTAAAGCACCACAATTATC 102709 Query 167261 GAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATA 167319 ||||| | | || ||||| || ||||| ||||||||||| | || | || ||| | Sbjct 102710 AAATTC-TCCACAATAATTAGGGGCTGAGAATACAGTAACAAGTTATCTTTTAGCAAAAA 102768 Query 167320 ATTCATAACCATCTTCAACAACTTCATGGGC---ACGTATTACAAGTTCAACTCCTAttt 167376 ||||||| |||||||||||||||| ||| || || |||| || | || || |||| Sbjct 102769 ATTCATATCCATCTTCAACAACTTAATGAGCTCTACATATT--AAATCTAAATCGAATTT 102826 Query 167377 ttttAAGAAAATTAGTTAAAGCACGTAA--TCCAAATTTATAACTACAACCTCTTTCAGA 167434 |||||| |||| ||| ||| || | | |||| | |||| || |||||||||| Sbjct 102827 TTTTAA-AAAACTAG--AAACAACATCAGGTCCATAAATATAGCTTACACCTCTTTCATT 102883 Query 167435 TTCAG--AATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAAC 167492 |||| || || |||||| | ||||| ||| | | |||||||| | Sbjct 102884 ATCAGCCCATCCTA--GAATATCTTTTTCAGGATCACTCCATAATAAATCGCATAAGAGA 102941 Query 167493 CCCTTATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTAATTTATTAATA 167552 || ||||||| || |||||||| | || |||| || ||| || ||||| | Sbjct 102942 CCTGTATCAGGAATTTCAATAGGACGCATTATTCTATGAATGGTTTCCAAATTATTCA-- 102999 Query 167553 TCTTCA-GTGAT--TCCACCATG 167572 |||| ||||| ||||||||| Sbjct 103000 -ATTCAGGTGATAATCCACCATG 103021 >seq534 Length=37867 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| |||||||||| | || | || || | |||| | | |||| ||||||||| Sbjct 14674 AAAATTTAAAAAGAGCACATTAATTATTCATCCACAGTCATCATAGCACCCGCATTATCG 14733 Query 167262 AATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | ||| |||||| ||||| ||||||| || |||| || | || ||| || Sbjct 14734 AATTC-TCCGCAATAATTCGGTGCCGAAAATAATGTTACTAGTTATCTTTTTGCAAAAAA 14792 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGC 167350 |||||| |||||||| ||||| | ||| || Sbjct 14793 TTCATATCCATCTTCTACAACCTAATGTGC 14822 >seq909 Length=101056 Score = 86.0 bits (94), Expect = 1e-11 Identities = 235/352 (67%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 ||||||| ||| ||| | ||| || || || |||| | | | || ||||||| Sbjct 77654 AATATTTAAAAGCTACACATTAAACTTTCATCAACGCTCATAAGAGCTCCGCAATTATCG 77595 Query 167262 AATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | ||| ||||||||| |||||||| || ||||| | || | || ||| || Sbjct 77594 AATTC-TCCGCAATAATTTGGGGCTGAAAAAACTGTAACAAGTTGTCTTTTTGCAAAGAA 77536 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACGTATTA--CAAGTTCAACTCCTAttttt 167378 |||||| |||||||| ||||| | |||||| | || | ||| | || || |||||| Sbjct 77535 TTCATATCCATCTTCTACAACCTAATGGGCTC-TACAAATCAAATCTAAATCGAATTTTT 77477 Query 167379 ttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTATAACTACAACCTCTTTCAGATTCA 167438 |||| |||| | | | || | ||| | ||||||| |||||||||| || Sbjct 77476 TTAA-AAAACTGGAAACTACATCTGGTCCGTAAATATAACTTACACCTCTTTCATTGTCT 77418 Query 167439 GAATAA--TAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGCATACCAACCCCT 167496 | || ||| ||| || | |||||| ||| | | |||||||| | || Sbjct 77417 GCCCAACCTAA--AATGTCTTTTTCTGGATCACTCCATAATAAATCGCATAAAAGTCCTG 77360 Query 167497 TATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTAATTTATT 167548 |||| || || || || ||| |||| |||| ||| |||||| ||||| Sbjct 77359 TATCTGGAATTTCTATTGGTCGCATAATTCTATGAATAGTTTCTAAATTATT 77308 >seq989 Length=20499 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||||| ||||| ||| | |||| || || || |||||| ||||| || Sbjct 17827 GTGCTTTTTAATAGACAACCTTCATTACATAGGATATCGATTATGGCTTTTAAAGCTAAT 17768 Query 305390 GTATT-ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 ||| | |||| | ||||| | || |||| | || |||| | |||| ||| || || Sbjct 17767 ATATAGAAATGGAAT-ACATTGAGGTTTAATGAATGTTGTTGTGCACCTTTTAACGCCGA 17709 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| |||||||||||||||||||| || || || Sbjct 17708 TTTCGATGGAGATGAAATGAATATTCACGTTCC 17676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186782129419337