Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1181 107 5e-18 seq1314 104 6e-17 seq892 95.1 3e-14 seq1038 84.2 5e-11 >seq1181 Length=100449 Score = 107 bits (118), Expect = 5e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | ||||| ||||| |||||||| || || || || || || | ||| Sbjct 75119 CAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCATCCGATTCAATTGAAAA 75060 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| ||| |||| |||||||||||| || || |||||||||| | Sbjct 75059 TGTTAAAGCCAAA-ATTTAAGACAAAGAAGGAATTCCTCCAGATTAATAAAGACTTATAT 75001 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | |||||||| | ||||||||||| || ||| | | |||||||| | | ||||| | Sbjct 75000 TTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTACAATATTTAAAAAGAAT 74941 Query 206363 CTACTCTTCACCTTGTTTTGAGA 206385 | ||||| || | ||||||||| Sbjct 74940 CCACTCTCCATTTAGTTTTGAGA 74918 >seq1314 Length=139336 Score = 104 bits (114), Expect = 6e-17 Identities = 180/262 (69%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 206124 AAAGGAAAAATATATTTTAAGAAATATATAAAGTAAGGCTAAAATGTACCAGATATTTTG 206183 ||| ||| || ||| ||||| ||| | | |||| |||||||| || || Sbjct 38641 AAAAGAAGAAAATAATTTAAAAAAAACAAAAAG-------AAAATGTAA---ATTTTCGT 38592 Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||| | ||||||||||| || ||||| || || ||| |||||| || | ||| Sbjct 38591 TAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTCTGATTCAATTGAAAA 38532 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| ||| |||| || ||||||||| || || |||||||||| || Sbjct 38531 TGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTAATAAAGACTTATTTT 38472 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || | || ||||| || || ||| | | |||||||| | | || || || Sbjct 38471 CGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTACAATATTTAAAAGGAATC 38412 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||| || | ||||||||| Sbjct 38411 CACTCTCCATTTGGTTTTGAGA 38390 >seq892 Length=79579 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||||| || || ||| ||| ||| | | ||| Sbjct 46881 CAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACTCTATTGAAAA 46822 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || |||| |||||||| ||| || || |||||||||||| Sbjct 46821 CGTCAAAGCTAAA-ATCTAAGACAAAGAAGGTATTCCCCCAGATTAATAAAGACTTATCT 46763 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| | || ||||| ||||| ||| | | || ||||| | | ||||| | Sbjct 46762 TCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTTAAAAAGAAT 46703 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | || || || | || || |||||| || Sbjct 46702 CAACACTCCATTTAGTCTTAAGACTTAGA 46674 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||||| || || ||| ||| ||| | | ||| Sbjct 47109 CAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACTCTATTGAAAA 47050 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| || |||| |||||||| ||| || || |||||||||||| Sbjct 47049 TGTCAAAGCTAAA-ATCTAAGATAAAGAAGGTATTCCCCCAGATTAATAAAGACTTATCT 46991 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| | || ||||| ||||| ||| | | || ||||| | | ||||| | Sbjct 46990 TCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTTAAAAAGAAT 46931 Query 206363 CTACTCTTCACCTTGTTTTGAGA 206385 | || || || | || |||||| Sbjct 46930 CAACCCTCCATTTAGTCTTGAGA 46908 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||| || || ||| ||| ||| | | ||| Sbjct 47336 AAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACTCTATTGAAAAC 47277 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || |||| |||||||| ||| || || ||||||||||||| Sbjct 47276 GTCAAAGCTAAA-ATCTAAGATAAAGAAGGTATTCCCCCAGATTAATAAAGACTTATCTT 47218 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| | || ||||| ||||| ||| | | || ||||| | | ||||| || Sbjct 47217 CGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTTAAAAAGAATC 47158 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || || | || |||||| Sbjct 47157 AACCCTCCATTTAGTCTTGAGA 47136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||| || || ||| ||| ||| | | ||| Sbjct 47564 AAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACTCTATTGAAAAC 47505 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || |||| |||||||| ||| || || ||||||||||||| Sbjct 47504 GTCAAAGCTAAA-ATCTAAGACAAAGAAGGTATTCCCCCAGATTAATAAAGACTTATCTT 47446 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| | || ||||| ||||| ||| | | || ||||| | | ||||| || Sbjct 47445 CGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTTAAAAAGAATC 47386 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || || | || |||||| Sbjct 47385 AACCCTCCATTTAGTCTTGAGA 47364 >seq1038 Length=46086 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || || || || ||| |||||| || | ||| Sbjct 43858 AAAACCTTAACTGGAAAAACTATTACATTAGACGTAGAAGCTTCTGATTCAATTGAAAAC 43917 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||| |||| || ||||| ||| || || ||||| | || ||| Sbjct 43918 GTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTCCAGATTAATAAAGATTAATTTTC 43977 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| | || ||||||||||| || | | |||||||| | | || ||||| Sbjct 43978 GCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATTACAATATTTAAAAGGAGTCA 44037 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||| || | ||||| ||| Sbjct 44038 ACTCTCCATTTAGTTTTAAGA 44058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181790258426657