Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1181 129 5e-25 seq892 125 6e-24 seq1038 120 3e-22 seq861 114 1e-20 seq1314 111 1e-19 >seq1181 Length=100449 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 ||||| || ||| || | || || ||||||||||| || ||| | ||||| | || || Sbjct 75142 TTAAAAAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTT 75083 Query 25226 GAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 || || |||| | || || | || ||| |||||| || ||||| || || || Sbjct 75082 GAGGCATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCT 75023 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || ||| | ||||||| || | | ||| ||| || | ||||||| |||| | | Sbjct 75022 CCAGATTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCA 74963 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| ||||||||||||| | |||||||| || ||||| |||||||| Sbjct 74962 GATTACAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq892 Length=79579 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || |||||||||||||||||| | ||||| | || || ||||| | Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || ||| ||||| |||||||| ||||| || || ||| | Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||| || | || || ||| || | ||||| | |||| | | || |||||| Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||||| ||| | |||||||| || ||||| ||||| || Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 46897 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || |||||||||||||||||| | ||||| | || || ||||| | Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || ||| ||||| |||||||| ||||| || || ||| | Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||| || | || || ||| || | ||||| | |||| | | || |||||| Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||||| ||| | |||||||| || ||||| ||||| || Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47125 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || |||||||||||||||||| | ||||| | || || ||||| | Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || ||| ||||| || ||||| ||||| || || ||| | Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||| || | || || ||| || | ||||| | |||| | | || |||||| Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||| |||||||||| || | |||||||| |||||| | ||||||||| Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGGA 46668 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || |||||||||||||||||| | ||||| | || || ||||| | Sbjct 47579 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47520 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || ||| ||||| || ||||| ||||| || || ||| | Sbjct 47519 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 47460 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||| || | || || ||| || | ||||| | |||| | | || |||||| Sbjct 47459 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47400 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||||| ||| | |||||||| || ||||| ||||| || Sbjct 47399 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47353 >seq1038 Length=46086 Score = 120 bits (132), Expect = 3e-22 Identities = 186/261 (71%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 25144 AAATTATATAAGTAGTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203 ||||| ||| | || ||| ||| ||| || ||| || | ||||| ||||| ||||| || Sbjct 43814 AAATT-TATTATTA-TTTAAAATAAAAAAAAATGTAAATTTTTGTTAAAACCTTAACTGG 43871 Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263 |||| | || || | || || ||||| ||| | || || | |||||| || || Sbjct 43872 AAAAACTATTACATTAGACGTAGAAGCTTCTGATTCAATTGAAAACGTAAAAGCCAAGAT 43931 Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323 | ||||| || ||||| || || ||| | ||||| | |||| || || ||| || | Sbjct 43932 TTAAGATAAGGAAGGTATTCCTCCAGATTAATAAAGATTAATTTTCGCAGGAAAATAATT 43991 Query 25324 CGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTA 25381 ||||||| |||| | |||| ||||||||||| |||| || || || | |||||| Sbjct 43992 AGAAGATGGAAGAACACTTTCAG--ATTACAATATTTAAAAGGAGTCAACTCTCCATTTA 44049 Query 25382 GTGTTAAGATTGAGAGGAGGA 25402 || |||||||| ||||| ||| Sbjct 44050 GTTTTAAGATTAAGAGGCGGA 44070 >seq861 Length=133231 Score = 114 bits (126), Expect = 1e-20 Identities = 487/762 (64%), Gaps = 12/762 (2%) Strand=Plus/Plus Query 137281 GCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCG 137340 || ||||| ||||||||||| |||||||| ||| | |||| |||| || || ||| Sbjct 47706 GCTCCATAATAAATAGTTTCAAAGATTTTTTCATTGATTTCTAAGGCTTTTTCACTTTCG 47765 Query 137341 TAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGT 137400 | | | | | | ||| ||||| |||||||||| || ||| || || |||||| Sbjct 47766 AAAGAAACTTTAAGCTTCATGAAGGCATCAGCAAGTCCTTAAACACCTATTCCAATAGGT 47825 Query 137401 CTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGC-GGATAAAAGTTTGCGTCTATAAT 137459 || ||||| | ||| |||| | || |||| | | ||||| | ||| | || |||| Sbjct 47826 CTATGTTTCATATTGGATAATCTGGC-CTAAGGAACTGGATAGTAATTTTCATCAATAAC 47884 Query 137460 TCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCA------ATTCGAAATC 137513 ||| || | || ||| || | | | || | || ||| | ||||||||| Sbjct 47885 TCTGTTTAAGTTAAAAGTGACTATTTTTGATATTTCGTACAATTTATTATATTCGAAATA 47944 Query 137514 GAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATAC 137573 | ||| | | || | |||| || | | | |||||| || || || ||||| Sbjct 47945 TGAATTTTCATTATCTTCAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACATAC 48004 Query 137574 GGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGA 137632 || |||| | | || | | |||| | |||||| | || | ||| ||| | Sbjct 48005 AGCAATTTCATCTGGTGAAG-TATATTCAATAATTTCAGTACACAAATTTGAACTTCTAA 48063 Query 137633 TCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATAC 137691 | |||||||| | || ||| |||| || | || | ||||||||||| |||||| Sbjct 48064 TAGTCCCCAAATTTTATTAATTACTTTT-TCTATTACAAGCATCTTTATATAACATATAA 48122 Query 137692 GGAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATT 137751 |||||||| ||||| | || || |||| ||| | | ||| || || ||||| Sbjct 48123 GGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAATT 48182 Query 137752 TGTTCTCTAAACTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCC 137811 || ||| || |||| |||| | | ||||| || || ||||| ||| ||| Sbjct 48183 CTTTTTCTTCCTTTTCCTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCCC 48242 Query 137812 ATAACAATCGTTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTC 137871 |||| | || ||| ||| || | || |||||||| | ||| | | | | | Sbjct 48243 CAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCTGCA 48302 Query 137872 CTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTC 137931 |||| ||| ||| || | | ||| |||||| ||| | | ||| || | || | Sbjct 48303 ATAACTCTTCTCATAAAAATATCAGGAATCCATAACGCATAGAAAAGATCTCTTGCTCTT 48362 Query 137932 ATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAA 137991 ||||| || ||| |||||| | |||||| |||| ||||||||||||| Sbjct 48363 TGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCAA 48422 Query 137992 GGCTCGATATAGACGGCCATAGCTCCTTTTCTTTTACCGCCT 138033 || || | ||| | || | | |||||||||||| || ||| Sbjct 48423 GGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACCT 48464 >seq1314 Length=139336 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||| || ||| || | || || ||||| ||||| |||||| | || || | || || || Sbjct 38612 AAAGAAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGA 38553 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 ||| ||| | || || | ||||| ||||||| || || || || || || || Sbjct 38552 AGCTTCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACC 38493 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||| | ||||||| |||| || || ||| || | ||||| | |||| | | || Sbjct 38492 AGATTAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGA 38433 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| |||| |||||||| | ||||| || || ||||| |||||||| Sbjct 38432 TTACAATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGG 38379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083178057440