Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq861 426 2e-114 seq1353 288 1e-72 >seq861 Length=133231 Score = 426 bits (472), Expect = 2e-114 Identities = 1216/1832 (66%), Gaps = 54/1832 (3%) Strand=Plus/Plus Query 68416 TACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAA 68475 || ||||| ||||| | ||| ||| | || ||||||||| || | ||||||| Sbjct 47109 TAAATACCTGTTTTTAATCCTTTTTCCCAAGCATAAAAATGCATAGAAGTCATTTTGGAA 47168 Query 68476 TAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAG--CTCCTC 68533 ||||| || || | ||||||||||| | |||| | || ||| || || | ||||| Sbjct 47169 TAACTAGGTTCTGAAATATGAATATTAAGAGATTAAGATTAATCAATAAATGGACTCCT- 47227 Query 68534 TATCTGCC---GCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAA 68590 || | || | || ||||| |||||| | || |||||||| ||| ||| ||| Sbjct 47228 ----TGACAAAGCTAAATTAATAATGGCCTTTTGTGAAACTTCCCAAACAGTTTTATAAA 47283 Query 68591 TCTGTTTGATATCATCTGGAAGG-CTCGTATTT--TGAATGGATCCACCATCGGATA-TA 68646 | | || | | || |||| || ||||| | || |||||| || | | || Sbjct 47284 TATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAAACAGATCCATTATAAGCCAGTA 47343 Query 68647 ATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGC 68706 ||| |||||| | | | |||| ||| | | ||||| || || ||||| Sbjct 47344 GTTA-ATTCTTAACACTAGGAGTCCATTGATTTATTTTAATTAAATCTTAAACAAGATGA 47402 Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 |||||||| |||||| || | | ||||| | || || | |||| ||||| Sbjct 47403 GGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTTGTATATAAATTAGAAGTATAA 47462 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | ||||||| |||||| | ||||| || ||| || |||||||||||||| || Sbjct 47463 GGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTAGAAGCAGTTGGCATAGGAGCT 47522 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATC- 68885 | || | | |||||| | ||||| | || |||||| ||||| | | |||||| Sbjct 47523 ATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTACTTTTTAAAGAATCCCAATCA 47582 Query 68886 ---CCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATT--CCGTTACTT 68940 ||| | | || ||| | |||||| | ||| | | | |||| || | | Sbjct 47583 TAACCACATTTATGA-GGTTTATAATTCCATAAATCAAACT--ACAATTTACCCTAAGAA 47639 Query 68941 GCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC 69000 ||| || || | | | ||||| ||| || | | ||| | ||| ||| Sbjct 47640 GCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTTTATAGCCAATTCCATGGATGCT 47699 Query 69001 TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGA 69060 || | || || |||||||| ||||| || || || | ||||| ||| |||| | | Sbjct 47700 TCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTCATTGATTTCTAAGGCTTTTTCA 47759 Query 69061 CTATCGAATGGATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 || ||||| | | | | ||| || || ||||| || | ||| | ||| || || || Sbjct 47760 CTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCAAGTCCTTAAACACCTATTCC 47818 Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATC 69179 |||||||||||| || |||| || | || | |||| ||||| ||||| ||| Sbjct 47819 AATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAGGAACTGGATAGTAATTTTCATC 47878 Query 69180 TATAATTTTATTAAGATTTCGGACT-ACTACTTTAACCA---CGTCC--TTTAGTTTGA- 69232 |||| | | || | | || | | |||| ||| | ||| | |||| | | Sbjct 47879 AATAACTCTGTTTA-AGTTAAAAGTGACTATTTTTGATATTTCGTACAATTTATTATATT 47937 Query 69233 -GAAAATCAAATCGTCC--ATCTATAACAA-ACATATTCAGT--GCTACAGATGCTAGAT 69286 |||| ||| || |||| ||||| | || || | | | ||| || | || Sbjct 47938 CGAAATATGAATTTTCATTATCTTCAACAACAAATTTTTATAAAGAAATAGAAGCCAAAT 47997 Query 69287 TACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTAC 69346 |||| || || | |||| | | ||||| || || || ||||| | ||| || Sbjct 47998 TACATACAGCAATTTCATCTGGTGAAGTATATTCAATAATTTCAGTACACAAATTTGAAC 48057 Query 69347 ATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAA 69406 | | |||||||||| ||||| | |||||| ||| | ||||| || || || || | | Sbjct 48058 TTCTAATAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAGCATCTTTATATAACA 48117 Query 69407 TAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCAT 69466 || | ||||| |||||||| || | ||| || |||||| || ||||| | || || | Sbjct 48118 TATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTT 48177 Query 69467 TTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTC 69524 | ||| | || | | ||| ||| ||||||||| || || ||| ||||| Sbjct 48178 TAATTCT--TTTTCTTCCTTTTCCTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTC 48235 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 ||||||||||||||| || || ||||||||| || |||||||| | ||| || Sbjct 48236 TTCTCCCCAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTC 48295 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 ||| | |||||| | ||||||| | ||| |||||||| | || ||| || ||||||| Sbjct 48296 ATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCCATAACGC-ATAGAAAAGATCTC 48354 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | | ||| | ||||| ||||| ||||||||| | | | ||| || | || ||||| Sbjct 48355 TTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAG 48414 Query 69704 AATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 |||||| ||||| | |||||| || |||| ||| || ||| ||||| | ||| Sbjct 48415 CATGCCAAGGTTCCAAATATATAGCAAATGA-TCCTTTTCTTTTGCCACCTCCTTAGTCT 48473 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | |||||||| || | |||| | ||| | | |||||||||||| |||||||| | ||| Sbjct 48474 ACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATTAGAATGTCCA 48533 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 || ||||| ||||||||| || | | |||||| || || | |||||||||| Sbjct 48534 TTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAACACCTATTCCT 48593 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTA 69942 || || | ||||| |||| |||||| ||||||||| |||||||| || || || | Sbjct 48594 CCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCCTTCAATTGAA 48653 Query 69943 TCA-TCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCAT 70000 ||| |||| ||| || || ||| ||||| ||| ||| | | | | | || ||| || | Sbjct 48654 TCACTCTA-CATAGTCAATAAG-AAACAACTACTCATCTAAGGGTTTGGAGATCCTGCGT 48711 Query 70001 TAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT-TCA 70059 ||||||| ||||||| ||| |||||||||||||||||| | | |||||| ||| | | Sbjct 48712 TAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTCACTCATTAAATTGTAAGTTCTGA 48771 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 || || || || || | | || || ||||| | || | ||| |||||| | Sbjct 48772 AT-GCACTTTATAAGTCTCTTTTGTGGATACCTATGGAAACTCTCATTAACATAGTTTAG 48830 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 |||| ||| || |||| | ||||| || || || ||| |||| | ||| || || Sbjct 48831 GGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAGATAAGATCTTTCTAAAGTCTTGAAA 48890 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 |||||| ||| || | | | |||||||| || Sbjct 48891 CCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 288 bits (318), Expect = 1e-72 Identities = 434/612 (71%), Gaps = 4/612 (1%) Strand=Plus/Minus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||||| || || ||||| |||||||| || ||||| || | |||||||||| | Sbjct 30116 ATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGTTAAACCAGGCATTAAAGA 30057 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCTTCTACTG 39749 | ||||| |||||||| ||||| ||| ||| |||| |||||||| ||||| | | Sbjct 30056 TCTTTTTTTAAGCCAAAAAATGGC-GCAGAAACTTCCACTGAAGAAGATTCCTTCAATAG 29998 Query 39750 CTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-ATCATTATGTATCCACTTCTGTGCC 39808 ||||||||||||| | || || || |||| || ||||| ||||| || ||| Sbjct 29997 CTGCAAATGCAACTAATCGAGAAGCGAAA-TTGTCATTATTATTAATCCATTTTAAAGCC 29939 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTT 39868 || | |||||| || |||| ||| || || ||| ||||| ||| | | |||| Sbjct 29938 CATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAAGCTTTAAAAAGAAACTCTTTT 29879 Query 39869 TCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTT 39928 |||| | |||||| | ||| ||||||||||| | | ||| |||| ||||| || ||| Sbjct 29878 TCATTATCATCTTTTATATAAGTATCTATTAATAAAGAATAAGTTTCGGAATGAATATTT 29819 Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 || || || || | |||||| || ||| ||||||||| | ||||| || || | | Sbjct 29818 TCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCTGGAATTTAAACTTCACACATA 29759 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 ||| ||| || |||||||| || |||||||| ||| ||||||||||| | ||| Sbjct 29758 AATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAAGCTGCAAAAAATGCAAGAACA 29699 Query 40049 TGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGAT 40108 | |||||||| | | | || | |||||| | | ||| || || | ||||| | Sbjct 29698 TACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCCCAATCTTTCAAATCTTAATAA 29639 Query 40109 ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATA 40168 | ||| | ||| || ||||||||||| || || | | ||||||||||| | |||||| Sbjct 29638 AGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCTTTTTTGTACATTTCCCATATT 29579 Query 40169 TCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTCC 40228 | | ||||| |||||| || ||||||||||| |||||||||| | ||| || ||||| Sbjct 29578 TTATTATATTTTATTGGGAACATAACAAATCTGTTTGGATTTTCTTAAAGAATTGGTTCA 29519 Query 40229 ATAACTAAATCA 40240 | | |||||| Sbjct 29518 CTTTCGAAATCA 29507 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/219 (71%), Gaps = 13/219 (6%) Strand=Plus/Minus Query 39273 AAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGTGA---CATAACTCCCATTTT 39327 |||| ||| ||| ||| ||||| | |||||||||| || ||||||||| ||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACT--TTATCTTCTTTAGAAGACATAACTCCTGATTT 30475 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || ||||||||||| | || || || ||||||||||| |||| | |||| | || Sbjct 30474 TTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATC 30415 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 ||| | ||||| || || ||| |||| || |||| | | || | ||| ||| Sbjct 30414 CATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAA---GAGAATACAA 30358 Query 39448 ---TCTATCTGCAACAAATTCTATGTATGTTTTCATCAT 39483 |||||||||||||||||||| ||| ||||||||| Sbjct 30357 AAGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891481311880