Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1353 206 2e-48 seq1257 96.9 3e-15 >seq1353 Length=60684 Score = 206 bits (228), Expect = 2e-48 Identities = 491/731 (67%), Gaps = 11/731 (2%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| || ||||| |||| ||||| ||||| || | |||||| ||||||| Sbjct 29534 AGAAAATCCAAACAGATTTGTTATGTTCCCAATAAAATATAATAAAATATGGGAAATGTA 29593 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 |||||||| || || ||||||||||||||||| ||| ||||| | | |||| || Sbjct 29594 CAAAAAAGAACTCGCTTCATTTTGGACAGCAGACGAAATTGATCTTTATTAAGATTTGAA 29653 Query 43804 ACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 | ||||| ||| | || | ||| ||||| | ||| | || ||||| Sbjct 29654 AGATTGGGAAAGATTGACTGATGGCGAGAGACACTTTATTAAGTATGTTCTTGCATTTTT 29713 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA 43923 ||| || || || || || |||||||| | | ||| | |||||| | Sbjct 29714 TGCAGCTTCAGATGGAATTGTTCTAGAAAATTTAGCTGAATAATTTATGTGTGAAGTTTA 29773 Query 43924 ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 | | ||||||||| || ||| ||||| ||| |||| || || |||||||||||||| || Sbjct 29774 AATTCCAGAAGCAAGAGCTTTCTATGGATTTTAAATAGCTATGGAAAATATTCATTCCGA 29833 Query 43984 AATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTT 44043 || || | | | |||||||| || || ||||||| | || || | | || Sbjct 29834 AACTTATTCTTTATTAATAGATACTTATATAAAAGATGATAATGAAAAAGAGTTTCTTTT 29893 Query 44044 TAATGCGA-TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA 44102 ||| || | ||| | | |||| || || | ||||| | ||||| | ||||||| Sbjct 29894 TAAAGCTTGTCTAAATATT-CCTGTAATAAATAAAAAAGCTTAATGGGCTTTAAAATGGA 29952 Query 44103 TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 | ||| ||||| ||| | ||| | || || ||||||| | | ||||| || | Sbjct 29953 TTAATAATAATGACAATTTCGCTTCTCGATTAGTTGCATTTGCAGCTATTGAAGGAATCT 30012 Query 44163 TCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 |||| ||| || |||| |||| |||||| | || ||| || ||| |||||||| Sbjct 30013 TCTTCAGTGGAAGTTTCTGCG-CCATTTTTTGGCTTAAAAAAAGATCTTTAATGCCTGGT 30071 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || ||||||||||| |||||| | || ||||| |||||| ||||||||||| Sbjct 30072 TTAACTTTTTCAAATGAATTAATATCAAGAGACGAAGGATTACATACAGATTTTGCTTGT 30131 Query 44282 TTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTG 44339 ||| ||||| || || | | || ||| | | | |||| | ||| | |||| Sbjct 30132 TTGCTTTACTCAATGATGTAAAATA-AATTAGC--TAAAG-AAGA-AGTTAATGTTATTA 30186 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 | | || || || | || ||| |||||||||| | ||| |||||||| | |||| Sbjct 30187 TCGCTGAAGCTGTTGAAATTGAAAAAGAATTTATTTCTGAAGCTTTACCTGTTGAATTAA 30246 Query 44400 TAGGAATGAAT 44410 | || |||||| Sbjct 30247 TTGGGATGAAT 30257 >seq1257 Length=94337 Score = 96.9 bits (106), Expect = 3e-15 Identities = 206/306 (67%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 40843 TAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGAC 40902 |||| || || ||||||| || |||||| | || || |||||||||||| | | | | | Sbjct 34051 TAGGTTTTCACAATAGGGAAGAGGGTGATTTAGGACCAGTTTATGGATTTTAATGGAGGC 33992 Query 40903 ATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAAT 40962 ||||||| || | |||| | | | ||||||||| ||||||||| ||| ||| Sbjct 33991 ATTTTGGTGCTTAGTATGCAGATTTTAAGACTGATTATAAAGGTAAAGGAATAGATTAAT 33932 Query 40963 TACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCG 41022 || | |||| ||||| || ||| |||| ||||| ||| | ||||||| | Sbjct 33931 TATAAGAACTTATTGATACAATAAAAAAAAATCCTGATAGTCGAAGATTAATATTAAATG 33872 Query 41023 CGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGT 41082 | ||||| || ||| || | | ||||| || ||||| |||||| | | | | | Sbjct 33871 CTTGGAATGTAAAAGACTTAAGTATAATGGCTTTACCACCATGTCATGTAATGAGCTAAT 33812 Query 41083 TTTACGTTTGCAATGGTGAACTGTCATGTCAAT--TGTATCAAAGATCAGGTGACATGGG 41140 |||| | || | ||| | | | | || ||||| |||||||| |||| ||||| Sbjct 33811 TTTATATAAATAAAG--GAAATTTAAGTTGCATGATGTATTAAAGATCATGTGATATGGG 33754 Query 41141 ACTAGG 41146 | |||| Sbjct 33753 ATTAGG 33748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446229662085