Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq861 111 1e-19 seq892 84.2 2e-11 >seq861 Length=133231 Score = 111 bits (122), Expect = 1e-19 Identities = 338/506 (67%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 131309 ACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCA- 131367 ||||||| | || | | || || |||| |||||| || || |||| || | | | | Sbjct 47967 ACAAATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATC-TGGT-GAAG 48024 Query 131368 -ATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGAT 131426 ||| | || |||||| | |||||||| || | || || |||||||||| || || Sbjct 48025 TATATTCAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAAT 48084 Query 131427 TGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGA 131485 | ||||| ||| ||| | || || || | ||| || || || || ||||| | || | Sbjct 48085 TACTTTTTCTATT-ACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAA 48143 Query 131486 GTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA-TTGGCCGCG 131544 | |||||||| | | | | |||| || || |||| | || | || || Sbjct 48144 GAATCAATAATATCTTGCCAAAGTTCTCTGGCTTT-AATTCTTTTTCTTCCTTTTCCTTC 48202 Query 131545 TTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAACGAACTGTCCAAATTG 131602 | |||| || || ||||| | ||||||| | || || |||| || ||| Sbjct 48203 TCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGT--AAACCT 48260 Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTC-AACTCGCTTCATAAA 131661 |||||| | || ||||| | | ||| | | |||| ||||| ||||||| Sbjct 48261 AAACATTCATTAGGGCACATCAAAGTCCA-ATGTTCATCTGCAATAACTCTTCTCATAAA 48319 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 | ||| || | ||||||||| || || |||||||| ||| ||| ||||||| | || || Sbjct 48320 AATATCAGGAATCCATAACGCATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCC-AT 48378 Query 131722 AAtttttttCAAATT-TAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 |||||||| |||| |||||| || |||| || |||||||| ||||||||||| | | Sbjct 48379 GATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAG 48438 Query 131781 CCATTGCGCCTTTGCGCTTACCGCCT 131806 | | || ||||| | || || ||| Sbjct 48439 CAAATGATCCTTTTCTTTTGCCACCT 48464 >seq892 Length=79579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || ||||| | || || ||||||| |||||||||||| | | | |||| Sbjct 47139 CAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTC 47198 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | | ||| || ||| | || || | | || ||| || || | ||| |||||||| Sbjct 47199 TTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTATC 47258 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | | |||| | || ||| | |||||||| |||| ||| || | Sbjct 47259 TTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGT 47318 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || | ||||| || ||||||| |||| Sbjct 47319 TTTTCCGGTTAATGTTTTAACGAAGATTTACATA 47352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923954182904