Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq861 93.3 5e-14 >seq861 Length=133231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 228/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || || |||| |||||| | ||||||||||| ||| |||||| || || | Sbjct 47791 CATCAGCAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGG 47850 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | ||| ||||| ||||| ||||| |||| ||||| || || || || | Sbjct 47851 CCTAAGGAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATTT 47910 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAG------TGCGAGTCTCTTCATTGACAT 111224 ||| ||||| | | ||| | ||| || ||| | | | |||||| ||| Sbjct 47911 TTGATATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAA 47970 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | ||| | | || || |||||||| || ||||| | ||||| || || | Sbjct 47971 ATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATT 48030 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | |||||| ||||| || || ||||| |||| ||||||||||| | || ||||| | Sbjct 48031 CAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTT 48090 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 | | || || ||||| || || | ||| || || || || || || Sbjct 48091 TTCTATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTC 48136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016165743200