Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1314 102 9e-17 seq1181 102 9e-17 seq148 86.0 7e-12 >seq1314 Length=139336 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || || || | || || || || |||||| | || ||||| | Sbjct 38606 AATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTC 38547 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | ||||| |||||| | |||||||| |||||||| ||||| | Sbjct 38546 TGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTA 38487 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||| |||||||| || | || || | | || || | || || || Sbjct 38486 ATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTACAA 38427 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | |||||||||||||||| ||| | || ||| Sbjct 38426 TATTTAAAAGGAATCCACTCTCCATTTGGTTTTG 38393 >seq1181 Length=100449 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || ||||| || | || || || || || ||| | || |||||| || Sbjct 75134 AATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCATC 75075 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| |||| | || || |||||| | ||||| || |||||||||||||| | Sbjct 75074 CGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGATTA 75015 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || || ||||| || || || | || |||| | || || |||| || || Sbjct 75014 ATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTACAA 74955 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | |||| ||||||||||| ||| |||| ||| Sbjct 74954 TATTTAAAAAGAATCCACTCTCCATTTAGTTTTG 74921 >seq148 Length=22778 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60142 TAACTCAGTTGGTTAGAGTGCGGGTCTTATGAGCCCGAAGTCGCGGGTTCGACCCCCGCC 60201 || ||||||||||||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct 22159 TAGCTCAGTTGGTTAGAGCGTGGGTCTTATGAGCCCAAGGTCGCGGGTTCGACCCCCGCT 22100 Query 60202 TAGAACA 60208 | || || Sbjct 22099 TGGAGCA 22093 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60142 TAACTCAGTTGGTTAGAGTGCGGGTCTTATGAGCCCGAAGTCGCGGGTTCGACCCCCGCC 60201 || ||||||||||||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct 22610 TAGCTCAGTTGGTTAGAGCGTGGGTCTTATGAGCCCAAGGTCGCGGGTTCGACCCCCGCT 22551 Query 60202 TAGAACACAT 60211 | || || || Sbjct 22550 TGGAGCATAT 22541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296021049040