Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1314 109 5e-19 seq892 104 2e-17 seq1181 96.9 3e-15 >seq1314 Length=139336 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || |||||| | || || || | |||||| | || || ||| | || Sbjct 38605 ATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTCT 38546 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || ||||||| ||||||| ||||| || ||||| ||| || Sbjct 38545 GATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTAA 38486 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | ||| || ||| |||| |||||| | || |||| |||||||| Sbjct 38485 TAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTACAAT 38426 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| ||||||| || || | |||||||||||| Sbjct 38425 ATTTAAAAGGAATCCACTCTCCATTTGGTTTTG 38393 >seq892 Length=79579 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | ||||| || | || ||| | || || ||| | ||| Sbjct 47579 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47520 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | |||||| ||||| ||||||||||||| || || || ||| || Sbjct 47519 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 47460 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | ||| || ||| |||| |||||| | || |||| || ||||| Sbjct 47459 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47400 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| || || ||| | ||||| || ||| | || | ||||| || Sbjct 47399 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTAT 47350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | ||||| || | || ||| | || || ||| | ||| Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | |||||| ||||| ||||||||||||| || || || ||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | ||| || ||| |||| |||||| | || |||| || ||||| Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| |||| || || || | ||||| || || Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTT 46684 >seq1181 Length=100449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | || || || | || ||| | || || || | ||| Sbjct 75133 ATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCATCC 75074 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || ||| |||||| ||||||||||||| || || || ||| || Sbjct 75073 GATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGATTAA 75014 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | |||| ||||| ||| |||||||||| | || |||| |||||||| Sbjct 75013 TAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTACAAT 74954 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| |||| || || || | ||||| |||||| Sbjct 74953 ATTTAAAAAGAATCCACTCTCCATTTAGTTTTG 74921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907434619840