Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq892 109 1e-18 seq1314 104 5e-17 seq1038 98.7 2e-15 >seq892 Length=79579 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| ||| | || || || || ||||||| || || || || | ||| || || Sbjct 46677 AAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCT 46736 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| ||||| | | || |||||||||||||| | || || || || |||| ||||| Sbjct 46737 TCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTC 46796 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| | ||| || ||| |||||||| || | ||| || |||||| || | ||| Sbjct 46797 TTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGT 46856 Query 211076 GATCGTCTTTCCCGT 211090 ||| || ||||| || Sbjct 46857 GATTGTTTTTCCGGT 46871 Score = 107 bits (118), Expect = 4e-18 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || || || || ||||||| || || || || | ||| || ||||| Sbjct 47364 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47423 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | || |||||||||||||| | || || || || |||| ||||| || Sbjct 47424 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47483 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | ||| || ||| |||||||| || | ||| || |||||| || | |||||| Sbjct 47484 GTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGAT 47543 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTTT 211138 || ||||| || | || || || || | | |||| | | ||| || | || ||| Sbjct 47544 TGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATTTATTTTTTTATTTTTT 47603 Query 211139 TAAAATATTTTTGTTTTATTTG 211160 | | |||||||||| |||| Sbjct 47604 TTGTTTTTTTTTGTTTTTTTTG 47625 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || || || || ||||||| || || || || | ||| || ||||| Sbjct 47136 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47195 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | || |||||||||||||| | || || || || |||| ||||| || Sbjct 47196 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47255 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||| || ||| |||||||| || | ||| || |||||| || | |||||| Sbjct 47256 ATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGAT 47315 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 47316 TGTTTTTCCGGT 47327 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || || || || ||||||| || || || || | ||| || ||||| Sbjct 46908 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 46967 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | || |||||||||||||| | || || || || |||| ||||| || Sbjct 46968 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47027 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||| || ||| || ||||| || | ||| || |||||| || | |||||| Sbjct 47028 ATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGAT 47087 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 47088 TGTTTTTCCGGT 47099 >seq1314 Length=139336 Score = 104 bits (114), Expect = 5e-17 Identities = 172/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| || |||| || || ||||| | ||| || || || ||||| | | Sbjct 38403 TGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAAAGAGTTCTGCCGTCTTCTAATTAT 38462 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| ||||| | || || || || |||| |||||||||||| | || ||| Sbjct 38463 TTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGAATTCCTTCCTTGTCTTAAATTTTT 38522 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || | ||||| |||||| || | ||| || || ||||| || Sbjct 38523 GCCTTTACATTTTCAATTGAATCAGAAGCTTCAACATCTAAAGTAATGGTTTTTCCTGTT 38582 Query 211092 AGAGTCTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTTTTAAAATATTT--T 211149 | ||| || || || | | |||||| ||| || || ||||||| ||||| | Sbjct 38583 AAAGTTTTAACGAAAATTTACATTTT-------CTTTTTGTTTTTTTTAAATTATTTTCT 38635 Query 211150 TGTTTTAT 211157 | |||||| Sbjct 38636 TCTTTTAT 38643 >seq1038 Length=46086 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || ||||| ||||| |||| || || ||||| | ||| || ||||| Sbjct 44058 TCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCC 43999 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | | || |||||||| || | | || || || ||||||| |||||||| Sbjct 43998 ATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTT 43939 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||||| ||| |||||||| || | ||||| ||| || || | || || Sbjct 43938 ATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAAT 43879 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || | || || ||||| | | |||||| Sbjct 43878 AGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTT 43840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159122044252205