Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1181 122 6e-23 seq892 105 5e-18 seq1314 100 2e-16 seq1038 100 2e-16 >seq1181 Length=100449 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | |||||||| ||||| | || || ||||| |||||| | || ||||| | Sbjct 75136 AAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCA 75077 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || | |||||| | ||||| | |||| || ||||||||||| | || ||||| Sbjct 75076 TCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAA-GACAAAGAAGGAATTCCTCCAGA 75018 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 | || | | | ||||||||||| ||| || ||||||| | | ||| | ||||| Sbjct 75017 TTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTA 74958 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||||| ||||| | ||||||||||| || || ||||||| Sbjct 74957 CAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq892 Length=79579 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | || ||||| ||||| | || |||||||| |||||| | || ||||| | | Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | ||| ||||| |||||||||||| | || |||||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | | || || || || ||| || | ||||||| | | ||| | || ||||| Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||| || ||| | |||||||| ||||| | |||||||| Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGGA 46668 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | || ||||||||||| | || |||||||| |||||| | || ||||| | | Sbjct 47580 AATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTC 47521 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||||| | ||| ||||| |||||||||||| | || |||||| | Sbjct 47520 CGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTA 47461 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | | || || || || ||| || | ||||||| | | ||| | || ||||| Sbjct 47460 ATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAA 47401 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||| || || | |||||||| || || || |||| || Sbjct 47400 TATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47353 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | || ||||||||||| | || |||||||| |||||| | || ||||| | | Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | ||| ||||| || ||||||||| | || |||||| || Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | | || || || || ||| || | ||||||| | | ||| | || ||||| Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||| || || | |||||||| || || || |||| || Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47125 >seq1314 Length=139336 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | |||||||||||||| | || |||||||| || ||| | || ||||| | Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||||| |||| ||||||| ||||| ||||| | || |||||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || | | | || || || || ||| || | ||||||| | ||| | |||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||| || ||||| | ||||| ||||| || || ||||||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGG 38379 >seq1038 Length=46086 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | ||||| ||||||||| | || |||||||| || || | || || || | Sbjct 43840 AAAATGTAAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGACGTAGAAGCT 43899 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||||| ||||| || ||| || || |||||| | || |||||| Sbjct 43900 TCTGATTCAATTGAAAACGTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTCCAGAT 43959 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATT 23785 || | | ||||| || || || ||| || | ||||| | | | |||||| | ||| Sbjct 43960 TAATAAAGATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAG--ATT 44017 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 |||| || |||| ||||| || | |||||||||||||| || |||| ||| || Sbjct 44018 ACAATATTTAAAAGGAGTCAACTCTCCATTTAGTTTTAAGATTAAGAGGCGGAGCA 44073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001290984636