Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1314 138 3e-27 seq892 129 1e-24 seq1181 120 7e-22 seq912 104 6e-17 seq1038 102 2e-16 seq717 102 2e-16 >seq1314 Length=139336 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||||||||||| |||| | ||||||||| | | |||||| || Sbjct 38390 TCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAAAGAGTTCTGCC 38449 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| | || |||||||| ||||||| || || || || ||||| |||||||| Sbjct 38450 GTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGAATTCCTTCCTT 38509 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || ||| ||| ||| ||| || | || || | ||| || ||||| || || Sbjct 38510 GTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACATCTAAAGTAAT 38569 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || |||||||| | ||| | || |||||| Sbjct 38570 GGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq892 Length=79579 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| | ||| | ||||| || |||||||||| | |||||| || | | |||||| Sbjct 46677 AAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCT 46736 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||||| | || || ||||||||||||| || || || || ||||||||||| Sbjct 46737 TCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTC 46796 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||| ||| ||| || || || ||| || | ||| || | ||| || ||||| | Sbjct 46797 TTTGTCTTAGAT-TTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAG 46855 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || || || || ||||| | ||| | || ||| Sbjct 46856 TGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Score = 129 bits (142), Expect = 1e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||| || |||||||||| | |||||| || | | |||||| || Sbjct 47364 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47423 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| | || || ||||||||||||| || || || || ||||||||||| || Sbjct 47424 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47483 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| ||| ||| || || || ||| || | ||| || | ||| || ||||| |||| Sbjct 47484 GTCTTAGAT-TTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGA 47542 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || || || || ||||| | ||| | || |||| Sbjct 47543 TTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATT 47580 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||| || |||||||||| | |||||| || | | |||||| || Sbjct 46908 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 46967 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| | || || ||||||||||||| || || || || ||||||||||| || Sbjct 46968 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47027 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||| ||| ||| || || ||| ||| || | ||| || | ||| || ||||| |||| Sbjct 47028 ATCTTAGAT-TTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGA 47086 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || ||||| | ||| | || ||| Sbjct 47087 TTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||| || |||||||||| | |||||| || | | |||||| || Sbjct 47136 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47195 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| | || || ||||||||||||| || || || || ||||||||||| || Sbjct 47196 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47255 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||| ||| ||| || || || ||| || | ||| || | ||| || ||||| |||| Sbjct 47256 ATCTTAGAT-TTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGA 47314 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || ||||| | ||| | || ||| Sbjct 47315 TTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 >seq1181 Length=100449 Score = 120 bits (132), Expect = 7e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||||||||||||||||||| | ||||||||| | | |||||| || Sbjct 74918 TCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAAAGAGTTCTGCC 74977 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | | || || || || ||||||| || || || || ||||| ||||| || Sbjct 74978 ATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGAATTCCTTCTTT 75037 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || ||| || || ||| ||| || | || || | || || ||||| |||| Sbjct 75038 GTCTTAAAT-TTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACATCTAAAGTGA 75096 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || || || || ||||| | ||| | || |||||| Sbjct 75097 TTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTT 75136 >seq912 Length=77546 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||| ||||||||||| || || ||||| || || |||||||||||||| ||||| Sbjct 29836 GAAAATTTATCCATCAGTAATCGAAATGACATTAGTGGGAATATAAGCAGAAACGTCACC 29895 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 |||| |||||| | |||||||| || || || || ||| ||||| | ||||||| Sbjct 29896 AGCTTATGTTTCTATAACAGGTAGAGCAGTAAGAGAACCAGCACCATGAGTTTTATT 29952 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| ||||||| | || || |||||||| |||||||||||||||||||||||| Sbjct 30153 GCACCATATTCAGGTTGCGCAATCGGTGAATATTTCAGAGATAATGGTAAACATGCTTTA 30094 Query 5091 ATCATCTACGATGATTTA 5108 || || || ||||||||| Sbjct 30093 ATTATATATGATGATTTA 30076 >seq1038 Length=46086 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| || || |||| | ||||||||| | | ||||| |||||||||| | Sbjct 44045 TGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCCATCTTCTAATTAT 43986 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | || || || || || |||||||||||||| |||| ||||| Sbjct 43985 TTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTTATCTTAAATCTTG 43926 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || || ||| || | || || | ||| |||||||| || || || || || || Sbjct 43925 GCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAATAGTTTTTCCAGTT 43866 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || | || |||||| Sbjct 43865 AAGGTTTTAACAAAAATTTACATTTT 43840 >seq717 Length=111386 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||| |||||||||||||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 27261 AAGATTTAACCATCAGTAATAGAGATGACATTAGTAGGTATATAAGCAGATACATCACCA 27320 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 |||| ||||| | || ||||| || || || || ||| | || | ||||||| Sbjct 27321 GCTTAGGTTTCAATGACTGGTAAAGCAGTAAGAGAACCAGCTCCGTGAGTTTTATT 27376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192500381639798