Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1353 226 2e-54 >seq1353 Length=60684 Score = 226 bits (250), Expect = 2e-54 Identities = 493/726 (68%), Gaps = 23/726 (3%) Strand=Plus/Minus Query 4422 TTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 || || ||||||||| ||||||| || | | | ||| |||| ||| || || Sbjct 30256 TTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAACA 30197 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTT------ACTAAGTAT 4535 ||||| | ||| ||| | || | || ||||||| | ||||||| | | |||| Sbjct 30196 GCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA- 30138 Query 4536 CCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 || ||| ||| |||||||| ||| || ||||||||||| || | ||| || Sbjct 30137 --AAGCAA---ACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTT 30083 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGAC 4655 ||||| ||||| || ||||||||| ||| |||||||||||||| || ||| || Sbjct 30082 GAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTT 30023 Query 4656 CCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTG 4715 ||| ||||| || ||||| | || ||||| || |||||||| || ||| | || Sbjct 30022 CCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGA---AATTG 29966 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 | || | |||||||||||||| ||||| | ||||||||| || | || | | | | Sbjct 29965 TCATTATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTA-TTACAGGAATATT 29907 Query 4776 TATA-TAGCGTTAAATAATTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTA 4833 || | ||| ||||| || ||| ||||||| |||| |||||||| ||||||| Sbjct 29906 TAGACAAGCTTTAAA-AAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTA 29848 Query 4834 GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCAT 4892 || ||| |||| ||||| |||||||| ||||| || | |||||| || ||||| | Sbjct 29847 ATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGC-T 29789 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTAT 4951 || ||||||| | || |||||| ||| |||| ||| |||| ||||| || || Sbjct 29788 CTTGCTTCTGGAATTTAAACTTC-ACACATAAATTATTCAGCTAAATTTTCTAGAACAAT 29730 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011 || || ||||||||||| || | ||||| ||||||| ||| || | Sbjct 29729 TCCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGT 29670 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 | | ||| ||| | |||||||| | | ||||| ||| || | |||||||| || Sbjct 29669 CAATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGA 29610 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||||||||||| ||| || | | ||| | || || | || ||||| Sbjct 29609 AGCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAA 29550 Query 5132 TCTGTT 5137 |||||| Sbjct 29549 TCTGTT 29544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039102186661