Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq861 480 1e-130 seq1353 264 2e-65 >seq861 Length=133231 Score = 480 bits (532), Expect = 1e-130 Identities = 1215/1823 (67%), Gaps = 36/1823 (2%) Strand=Plus/Plus Query 76824 TACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAA 76883 || ||||| ||||||| || ||| | || |||||||| |||| ||||||| Sbjct 47109 TAAATACCTGTTTTTAATCCTTTTTCCCAAGCATAAAAATGCATAGAAGTCATTTTGGAA 47168 Query 76884 TAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG--CTCCTC 76941 |||||||| || | ||||||||||| | || | | || ||| || || | ||||| Sbjct 47169 TAACTAGGTTCTGAAATATGAATATTAAGAGATTAAGATTAATCAATAAATGGACTCCTT 47228 Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001 | | || | || ||||||| |||||| | || |||||||| |||||| ||| | Sbjct 47229 GACAAA--GCTAAATTAATAATGGCCTTTTGTGAAACTTCCCAAACAGTTTTATAAATAT 47286 Query 77002 GTTTGATATCATCTGGAAGGT-TTGTATTT--TGAATGGAACCACCATCTGATATAATTG 77058 || | | || |||| | || ||||| | || || ||| || | | | | Sbjct 47287 CCTTCAAACTTTCAGGAATTTCTTATATTTATTAAACAGATCCATTATAAGCCAGTAGTT 47346 Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 |||||| | | | | |||| || | | ||||| || || |||||||||| Sbjct 47347 AATTCTTAACACTAGGAGTCCATTGATTTATTTTAATTAAATCTTAAACAAGATGAGGAT 47406 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 |||| |||||| || | | |||||| | || || | |||| ||||| |||| Sbjct 47407 TAACACAAACAAATTCACCCGCGAGTACTCTTCTTGTATATAAATTAGAAGTATAAGGTT 47466 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||||| ||||| ||||||| || ||||||||||||||||||||| || | | Sbjct 47467 CAAAAGATTCACAATTTCCTAAAATTTAAGAAGTAGAAGCAGTTGGCATAGGAGCTATTA 47526 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC----C 77294 | | | |||||| | ||||| | || |||||| ||||| | | | |||||| | Sbjct 47527 AAAGAGAATTTCTCATACCATATTTTTATATTTTACTTTTTAAAGAATCCCAATCATAAC 47586 Query 77295 CAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT--CCGTTACTAGCAT 77352 || | | ||| ||| | || ||| | ||| | | | |||| || | | |||| Sbjct 47587 CACATTTATGA-GGTTTATAATTCCATAAATCAAACT--ACAATTTACCCTAAGAAGCAG 47643 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 || || | | | ||||| ||| ||| || ||| | ||| ||||| Sbjct 47644 GGGAGCCTACAAAAGAGGCATAACATCCATCTTTTATAGCCAATTCCATGGATGCTTCAC 47703 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 | ||||| |||||||| ||||| || || || | ||||| ||| |||| ||| | Sbjct 47704 AAGCTCCATAATAAATAGTTTCAAAGATTTTTTCATTGATTTCTAAGGCTTTTTCACTTT 47763 Query 77473 CAAACGGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATA 77531 | || | | | | ||| || |||||||| || | ||| | ||| || || |||||| Sbjct 47764 CGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCAAGTCCTTAAACACCTATTCCAATA 47822 Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 ||||||||| || ||||||| | | | || | |||| ||||| ||||| || ||| Sbjct 47823 GGTCTATGTTTCATATTGGATAATCTGGCCTAAGGAACTGGATAGTAATTTTCATCAATA 47882 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCA---CGTCC--TTTAGTTTAA--GAAA 77644 | | | || | || | |||| ||| | ||| | |||| | || |||| Sbjct 47883 ACTCTGTTTAAGTTAAAAGTGACTATTTTTGATATTTCGTACAATTTATTATATTCGAAA 47942 Query 77645 ATCAAATCTTCC--ATCTATAACAA-ACATGTTCA--AAGCTATAGATGCTAGATTACAA 77699 ||| ||| |||| ||||| | || || | ||| ||||| || | |||||| Sbjct 47943 TATGAATTTTCATTATCTTCAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACAT 48002 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || || | |||| | | ||||| || || || ||||| | ||| || | | Sbjct 48003 ACAGCAATTTCATCTGGTGAAGTATATTCAATAATTTCAGTACACAAATTTGAACTTCTA 48062 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 ||||| |||| ||||| || || || ||| |||| || | || ||||| | ||| | Sbjct 48063 ATAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAGCATCTTTATATAACATATAA 48122 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATC 77879 ||||| || ||||| || | || || |||||| || ||| | |||| ||||| || Sbjct 48123 GGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAATT 48182 Query 77880 ATAGAT-TTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 | | || | ||| ||||||||||||| || || ||||||||| ||||| Sbjct 48183 CTTTTTCTTCCTTTTCCT-TCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCC 48241 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 |||||||||| || || |||||||| ||||||||||| | ||| | ||||| | Sbjct 48242 CCAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCTGC 48301 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 |||||| | ||||||| | |||||| ||||||| ||| || ||||||| | ||| Sbjct 48302 AATAACTCTTCTCATAAAAATATCAGGAATCCATAACGCATAGAAAAGATCTCTTGCTCT 48361 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 || ||||| ||||| ||| ||||| | | | ||| || | || ||||| |||||| Sbjct 48362 TTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCA 48421 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 ||||| | |||||| || | ||| || ||| |||||| | |||| |||||| Sbjct 48422 AGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACCTCCTTAGTCTACATATCT 48481 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 ||| || | |||| | ||| | ||||| |||||||| || ||||| |||||| ||||| Sbjct 48482 GGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATTAGAATGTCCATTAGTTCC 48541 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCAT 78298 ||||||||| | | | |||||| || || | ||||||||||| || | Sbjct 48542 TCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAACACCTATTCCTCCCGCACT 48601 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 ||||||||||| ||| || |||||||||||| || || || || || ||| | Sbjct 48602 CTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCCTTCAATTGAATCACTCTA 48661 Query 78359 CAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 ||| || || ||| ||||| ||| ||| | | | | || |||||| |||||||| | Sbjct 48662 CATAGTCAATAAG-AAACAACTACTCATCTAAGGGTTTGGAGATCCTGCGTTAAATAAAG 48720 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT-TCAATAGCTGAT 78476 | |||| |||||| || |||||||||||| | || |||||| ||| | ||| || | Sbjct 48721 TAGGAGTTGCATGAGTGAACCATTTTTCACTCATTAAATTGTAAGTTCTGAAT-GCACTT 48779 Query 78477 TCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 | || ||| | || || || |||| | || | ||| |||||| | |||||||| Sbjct 48780 TATAAGTCTCTTTTGTGGATACCTATGGAAACTCTCATTAACATAGTTTAGGGTCTTTCC 48839 Query 78537 ACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 || | || | ||||| || | || ||| |||| ||||| || ||||||||| || Sbjct 48840 ACAATTTTTCCGTGAATTTTTAAAAGATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAG 48899 Query 78597 TTGTATGAAAAGTCTCTCTCGTA 78619 | || | | | ||||| || || Sbjct 48900 TCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 264 bits (292), Expect = 2e-65 Identities = 429/615 (70%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| |||||||| ||| | ||||| ||||| |||||||| || ||||| || Sbjct 30133 AAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGTT 30074 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | ||| ||||||| | |||||| |||||||| || || |||| |||| ||| Sbjct 30073 AAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCACTGAAG 30014 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || ||||| | || |||||||| | || || || || | | || | Sbjct 30013 AAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTATTATTA 29954 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | ||||| | ||| || || |||| ||| || || ||| ||| Sbjct 29953 ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAAGCTTTA 29894 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || ||||| | ||||||||| |||||| | |||||||||||||| | | ||| || Sbjct 29893 AAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAATAAGTT 29834 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||| ||||||||||| || || || | |||||| || ||| ||| ||||||| || Sbjct 29833 TCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCTGGAATT 29774 Query 48498 TGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 | || || ||| |||| |||||| ||||| || || |||||||| ||| || Sbjct 29773 TAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAAGCTGC 29715 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 ||||||||| | |||| |||||||| | | | ||| ||||| | | | ||| || Sbjct 29714 AAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCCCAATC 29655 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 || | ||||| | | ||| | ||| || |||||||||||||| || | ||||||| Sbjct 29654 TTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCTTTTTT 29595 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTT 48736 ||||| | |||||| | | | |||| |||||||| ||||||||||| |||||||||| Sbjct 29594 GTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTGGATTTTC 29535 Query 48737 TGCAAGGATAGGTTC 48751 | ||| || ||||| Sbjct 29534 TTAAAGAATTGGTTC 29520 Score = 100 bits (110), Expect = 4e-16 Identities = 157/220 (71%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 47797 AAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGAGA---CATAACTCCCATTTT 47851 |||| ||| ||| ||| ||||| | |||||||||| ||| ||||||||| ||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACT--TTATCTTCTTTAGAAGACATAACTCCTGATTT 30475 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 || ||||||||| || | || || || ||||||||||| |||| | |||| | || Sbjct 30474 TTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATC 30415 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC----TAATTCTGAAA 47967 ||| | ||||| || || || |||| | | |||| | | || ||| | ||| Sbjct 30414 CATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAAGAGAATAC--AAA 30357 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 |||||||||||||| ||||||| |||| ||||||||| Sbjct 30356 --AGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651285662880