Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq861 441 1e-118 seq1353 286 5e-72 >seq861 Length=133231 Score = 441 bits (488), Expect = 1e-118 Identities = 1210/1827 (66%), Gaps = 44/1827 (2%) Strand=Plus/Plus Query 75419 TACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAA 75478 || ||||| ||||||| || ||| | || |||||||| || | ||||||| Sbjct 47109 TAAATACCTGTTTTTAATCCTTTTTCCCAAGCATAAAAATGCATAGAAGTCATTTTGGAA 47168 Query 75479 TAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG--CTCCTC 75536 ||||| || || | ||||||||||| | || | | || ||| || || | ||||| Sbjct 47169 TAACTAGGTTCTGAAATATGAATATTAAGAGATTAAGATTAATCAATAAATGGACTCCTT 47228 Query 75537 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 75596 | | || | || ||||||| |||||| | || |||||||| |||||| ||| | Sbjct 47229 GACAAA--GCTAAATTAATAATGGCCTTTTGTGAAACTTCCCAAACAGTTTTATAAATAT 47286 Query 75597 GTTTGATATCATCTGGAAGAT-TTGTATTT--TGAATGGATCCGCCATCAGATATAATTG 75653 || | | || |||| | || ||||| | || ||||| || || | | | Sbjct 47287 CCTTCAAACTTTCAGGAATTTCTTATATTTATTAAACAGATCCATTATAAGCCAGTAGTT 47346 Query 75654 TATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 75713 |||||| | | | |||| ||| | | ||||| || || |||||||||| Sbjct 47347 AATTCTTAACACTAGGAGTCCATTGATTTATTTTAATTAAATCTTAAACAAGATGAGGAT 47406 Query 75714 TAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTT 75773 ||||| |||||| || | | |||||||| || || | |||| ||||| |||| Sbjct 47407 TAACACAAACAAATTCACCCGCGAGTACTCTTCTTGTATATAAATTAGAAGTATAAGGTT 47466 Query 75774 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 | | ||||||| ||||| ||||||| || ||| |||||||| |||||||| || | | Sbjct 47467 CAAAAGATTCACAATTTCCTAAAATTTAAGAAGTAGAAGCAGTTGGCATAGGAGCTATTA 47526 Query 75834 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC----C 75889 | | | |||||| | ||||| | || |||||| ||||| | | | |||||| | Sbjct 47527 AAAGAGAATTTCTCATACCATATTTTTATATTTTACTTTTTAAAGAATCCCAATCATAAC 47586 Query 75890 CAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATT--CCGTTGCTAGCAT 75947 || | | ||| ||| | || ||| | ||| | | | |||| || | |||| Sbjct 47587 CACATTTATGA-GGTTTATAATTCCATAAATCAAACT--ACAATTTACCCTAAGAAGCAG 47643 Query 75948 ATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTA 76007 || || | | | | ||| || || ||| ||| | ||| || || Sbjct 47644 GGGAGCCTACAAAAGAGGCATAACATCCATCTTTTATAGCCAATTCCATGGATGCTTCAC 47703 Query 76008 ACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTAT 76067 | || || |||||||| ||||| || || || | ||| | ||| |||| ||| | Sbjct 47704 AAGCTCCATAATAAATAGTTTCAAAGATTTTTTCATTGATTTCTAAGGCTTTTTCACTTT 47763 Query 76068 CAAAAGGATAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 | |||| | | | ||| || || ||||| || ||||| | ||| || || |||||| Sbjct 47764 CGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCAAGTCCTTAAACACCTATTCCAATA 47822 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 ||||||||| || ||||||| | | || | |||| || || ||||| ||| ||| Sbjct 47823 GGTCTATGTTTCATATTGGATAATCTGGCCTAAGGAACTGGATAGTAATTTTCATCAATA 47882 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCA---CGTCC--TTTAGTTTGA--GAAA 76239 | | | || | || |||| ||| | ||| | |||| | | |||| Sbjct 47883 ACTCTGTTTAAGTTAAAAGTGACTATTTTTGATATTTCGTACAATTTATTATATTCGAAA 47942 Query 76240 ATCAAATTTTCC--ATCTATCACAAACATATTA----AGAGCTATAGATGCTAGATTACA 76293 ||||||| |||| ||| |||| ||| | || ||||| || | |||||| Sbjct 47943 TATGAATTTTCATTATCT-TCAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACA 48001 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 || || | |||| | | ||||| || || || || || | ||| || | Sbjct 48002 TACAGCAATTTCATCTGGTGAAGTATATTCAATAATTTCAGTACACAAATTTGAACTTCT 48061 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||||| || | ||||| || || || ||| | ||||| | || ||||| | | | | Sbjct 48062 AATAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAGCATCTTTATATAACATATA 48121 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT 76473 |||||||||||||| || | || || |||||| || ||| | |||| ||||| || Sbjct 48122 AGGAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAAT 48181 Query 76474 TATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCT 76531 | | ||| | | ||| ||||||||||||| || | ||||||||| ||| Sbjct 48182 TCTT--TTTCTTCCTTTTCCTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCT 48239 Query 76532 CCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCT 76591 |||||||||||| ||||| ||||||||| || |||||||| | ||| | ||||| Sbjct 48240 CCCCAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCT 48299 Query 76592 TCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 76651 | |||| | | ||||||| | |||||| ||||||| ||| || ||||||| | | Sbjct 48300 GCAATAACTCTTCTCATAAAAATATCAGGAATCCATAACGCATAGAAAAGATCTCTTGCT 48359 Query 76652 CTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGC 76711 || | ||||| ||||| ||| ||||| | | || || || | || ||||| |||| Sbjct 48360 CTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGC 48419 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 || ||||| | |||||| || | || || ||| |||||| | |||| |||| Sbjct 48420 CAAGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACCTCCTTAGTCTACATAT 48479 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG-ATGTACCATTTGT 76830 ||||| || | |||| | ||| | ||||| |||||||| || |||| |||| ||||| || Sbjct 48480 CTGGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATTAGAATGT-CCATTAGT 48538 Query 76831 TCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGC 76890 ||| ||||||||| | | | | |||||| || || | ||||||||||| || Sbjct 48539 TCCTCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAACACCTATTCCTCCCGC 48598 Query 76891 CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATC 76950 | ||||| |||| |||||| ||||||||| ||||| ||||| || || |||| Sbjct 48599 ACTCTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCCTTCAATTGAATCACT 48658 Query 76951 CATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACA 77009 | ||| || || ||| ||||| ||| ||| | | | | || |||||| ||||| | Sbjct 48659 CTACATAGTCAATAAG-AAACAACTACTCATCTAAGGGTTTGGAGATCCTGCGTTAAATA 48717 Query 77010 ATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT-TCAAT-AAC 77067 | ||||||| |||||||||||||||||||||| | || |||||| ||| | ||| || Sbjct 48718 AAGTAGGAGTTGCATGAGTGAACCATTTTTCACTCATTAAATTGTAAGTTCTGAATGCAC 48777 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 | || || || | || || || |||| | || | ||| |||||| | |||| Sbjct 48778 T--TTATAAGTCTCTTTTGTGGATACCTATGGAAACTCTCATTAACATAGTTTAGGGTCT 48835 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 ||| ||| | || | ||||| || | || ||| |||| ||||| || |||||||| Sbjct 48836 TTCCACAATTTTTCCGTGAATTTTTAAAAGATAAGATCTTTCTAAAGTCTTGAAACCAAA 48895 Query 77188 ATAGTTGTATGAAAAGTCTCTTTCGTA 77214 | ||| || | | | |||||||| || Sbjct 48896 AAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 286 bits (316), Expect = 5e-72 Identities = 434/615 (71%), Gaps = 2/615 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| |||||||| ||| | ||||| ||||| |||||||| || ||||| || Sbjct 30133 AAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGTT 30074 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| | ||||| |||||||| || || |||| |||| ||| Sbjct 30073 AAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCACTGAAG 30014 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || ||||| | ||| || ||||| || | || || || || ||| ||||| | Sbjct 30013 AAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTATTATTA 29954 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| || |||||| | ||| ||||| |||| ||| || || ||| ||| Sbjct 29953 ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAAGCTTTA 29894 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || ||||| | |||||||| | |||||| | ||| ||||||||||| | | ||| || Sbjct 29893 AAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAATAAGTT 29834 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||||| ||||| ||||| || | |||||| || ||| ||||||||| | ||| Sbjct 29833 TCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCTGGAATT 29774 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 | || || ||| |||| ||||| ||||| || || |||||||| ||| || Sbjct 29773 TAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAAGCTGC 29715 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||||||||| | |||| |||||||| | | | || | ||||| | | | ||| || Sbjct 29714 AAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCCCAATC 29655 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 || | ||||| | | ||| | ||| || |||||||| ||||| || | ||||||| Sbjct 29654 TTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCTTTTTT 29595 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTT 47225 ||||| | |||||| | | ||||| || || || ||||||||||| |||||||||| Sbjct 29594 GTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTGGATTTTC 29535 Query 47226 TGCAAGTATAGGTTC 47240 | ||| || ||||| Sbjct 29534 TTAAAGAATTGGTTC 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916425141440