Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq892 136 1e-26 seq1181 132 1e-25 seq1314 122 2e-22 seq1038 105 2e-17 >seq892 Length=79579 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 46891 AAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACT 46832 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || ||||||||| || || | ||||||||||| || || || || | || Sbjct 46831 CTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAATAAA 46772 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| |||||| | | ||||| ||||| |||||| | || || || | Sbjct 46771 GACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTT 46712 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||||| ||| | || || ||||| ||| Sbjct 46711 AAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGA 46674 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 47575 AAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACT 47516 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || ||||||||| || || | ||||||||||| || || || || | || Sbjct 47515 CTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAATAAA 47456 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| |||||| | | ||||| ||||| |||||| | || || || | Sbjct 47455 GACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTT 47396 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || ||| | || |||||| | ||| Sbjct 47395 AAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGA 47358 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 47347 AAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACT 47288 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || ||||||||| || || | || |||||||| || || || || | || Sbjct 47287 CTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAATAAA 47228 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| |||||| | | ||||| ||||| |||||| | || || || | Sbjct 47227 GACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTT 47168 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || ||| | || |||||| | ||| Sbjct 47167 AAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGA 47130 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 47119 AAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCCGACT 47060 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || |||||| || || | || |||||||| || || || || | || Sbjct 47059 CTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAATAAA 47000 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| |||||| | | ||||| ||||| |||||| | || || || | Sbjct 46999 GACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAATATTT 46940 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || ||| | || |||||| | ||| Sbjct 46939 AAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGA 46902 >seq1181 Length=100449 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| ||||| | ||||| ||||| ||||| | || || || || || Sbjct 75129 AAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGCATCCGATT 75070 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || || ||| || ||| | |||||||||||||| ||||| || | || Sbjct 75069 CAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGATTAATAAA 75010 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||| || ||||||||| | | |||||||| || |||||| | ||||| || | Sbjct 75009 GACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTACAATATTT 74950 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || || ||| | ||||||||| | ||| Sbjct 74949 AAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGA 74912 >seq1314 Length=139336 Score = 122 bits (134), Expect = 2e-22 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 177883 AAAATATTTTAAGAAATATATAAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTC 177942 |||||| ||||| ||| | | |||| |||||| |||||||||| |||||| Sbjct 38633 AAAATAATTTAAAAAAAACAAAAAG-------AAAATGT---AAATTTTCGTTAAAACTT 38584 Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 | ||||||||||| || || | || || ||| || || | || || || || || Sbjct 38583 TAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTCTGATTCAATTGAAAATGTAAAGG 38524 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||| ||| | ||||| |||||||| || || || | || ||||||| ||||| || | Sbjct 38523 CAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTAATAAAGACTTATTTTCGCTGGTA 38464 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 || | | ||||| || || |||||| | ||||| || | |||| ||||| || || | Sbjct 38463 AATAATTAGAAGACGGCAGAACTCTTTCTGATTACAATATTTAAAAGGAATCCACTCTCC 38404 Query 178123 ATCTTGTTTTGAGACTCAGA 178142 || | ||||||||| | ||| Sbjct 38403 ATTTGGTTTTGAGATTAAGA 38384 >seq1038 Length=46086 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 ||||||| || ||||| | || |||||||| || || | || || ||| || || Sbjct 43847 AAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGACGTAGAAGCTTCTGATT 43906 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || ||||| ||| |||||| | || || ||||| || ||||| || | || Sbjct 43907 CAATTGAAAACGTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTCCAGATTAATAAA 43966 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||||||||| || ||| | ||||| || | Sbjct 43967 GATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATTACAATATTT 44026 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||| | ||||| ||| | ||| Sbjct 44027 AAAAGGAGTCAACTCTCCATTTAGTTTTAAGATTAAGA 44064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203700092200298