Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1421 172 6e-38 >seq1421 Length=1529 Score = 172 bits (190), Expect = 6e-38 Identities = 573/883 (65%), Gaps = 15/883 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | || | || ||||| ||||| |||||||| || || || | | Sbjct 1323 TTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATGT 1264 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAA-TATTTTAGAGTACCCC-AGTTCGGCGAT 16791 |||| | ||||| ||||| | || || | |||||| || || || || || || Sbjct 1263 CCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGA--ACTCCTAGAGCGAAGAG 1206 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | |||||| |||||||| || || |||| ||| | || ||||||| || || || Sbjct 1205 AAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAG 1146 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || || | || ||| |||| | || || || || | |||| || Sbjct 1145 CTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAATGAT 1086 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | | || || | ||| | ||| |||||||| || | || ||||| ||||| Sbjct 1085 CTCAAGGATTCTCTCATTGGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAGCGAA 1026 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 || || | || || ||||| ||| || || ||||| || || | || ||||| Sbjct 1025 GTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTGGCAT 966 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||| |||||||| | ||| || || | ||| || |||||||||||||||||||| Sbjct 965 GAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATACCCTC 906 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || || || || || | || | ||| ||| | | | || | | || ||||||| | Sbjct 905 AACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAG---CTGTTTCACCAATCCATCT 849 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAA--TCCATCGTTTCTATGGCCTTAAATAAT 17209 | |||| || || |||| | | ||| || ||| | ||| || ||||| Sbjct 848 CAATGCCCATTCTGCCTTTTTAGTGA--CAACTGGGATATTTTAGACGGCTTTGAATAAA 791 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | |||||||| || ||| | || | ||||| || || ||| ||| |||| ||| Sbjct 790 TATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAG 731 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || ||||| ||||| |||| |||||||| || |||| ||||| | | |||| | Sbjct 730 TGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATT 671 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | |||||| || ||||| || || || || || ||||| || |||||||| Sbjct 670 TCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAG 611 Query 17390 GCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTAAGAACGCGCCAGTCCTTTA 17447 || | | || || ||||| | | | |||| || || || |||||| || | Sbjct 610 GCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTG--AGTCTCTCCCAGTCTTTAA 553 Query 17448 AATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACA 17507 |||| ||| | ||| | ||| || | ||||| || |||| | | ||| |||| Sbjct 552 CATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACA 493 Query 17508 TATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCT 17550 | ||||| |||||||| |||| || || || | ||| |||| Sbjct 492 TTTTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCT 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517407266530440