Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1421 203 3e-47 >seq1421 Length=1529 Score = 203 bits (224), Expect = 3e-47 Identities = 402/592 (68%), Gaps = 5/592 (1%) Strand=Plus/Minus Query 16176 TATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235 ||| ||| || || || | || ||||| |||||||| || | ||||| ||||| Sbjct 1059 TATTGTTAAGATGCTTGTAAATGAGACAAGCGAAGTCAGTGTGCATACCTTCATCTCTAG 1000 Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295 ||| || || || || || || | |||||||| ||| |||||||| | |||||| | Sbjct 999 AGATGAGCTCATTAGAGAAGGTAAGTCCTGGCATGAGTCCACGTTTCTTGAGCCAGAAAA 940 Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTT 16355 | | | || || || |||||||||||||||||||| || || ||||| | || | || Sbjct 939 TTGAACAGAAAGAGCCAGAAAAGAATATACCCTCAACTGAAGCGAAAGCAACTAGCCTTT 880 Query 16356 CCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTA 16415 | ||| | ||| || | | || ||||||| || | ||||||| || |||| | | Sbjct 879 CAGCGAAGCTAG---CTGTTTCACCAATCCATCTCAATGCCCATTCTGCCTTTTTAGTGA 823 Query 16416 TACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATAT 16475 | || ||| | ||| || || || | |||||||| ||| || | || Sbjct 822 CAACTGGGATATTTTAGACGGCTTTGAATAAATATTCTTTTTCTTGAGCGTCACTAATCA 763 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | |||||||| || | ||| |||| ||||| ||||| || || |||| |||| Sbjct 762 AAGTATCAATTAGAAGGGAGTAGGTTTCAGAGTGGATGTTTTCCATCATCATCTAGAATC 703 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 | ||||| |||| ||| || | | || | ||| | | |||| || || ||||||| Sbjct 702 CGTAGAAACATCTAGCTTCTGGAACCTGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCT 643 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655 |||| || ||||||||| ||||| ||||| || | | ||| || ||||| | | | | Sbjct 642 CATTTACAATACCGTCAGAAGCAGCGAAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCT 583 Query 16656 CGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 ||| | || | | ||| ||||| | |||| ||| | ||| | ||| |||| | Sbjct 582 CGTTGTCGTTGAGTCTCTCCCAGTCTTTAACATCTGTGGCAAGATCGATTTCCTCTGATG 523 Query 16716 TCCA-AAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 |||| || ||| |||| | | ||| ||||||||||| |||||||| |||| Sbjct 522 TCCAGAATGCT-GCCATTTAATCTTTGTACATTTTCCAGATATCATTATATT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511277705323560