Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6928 268 1e-66 seq14392 246 4e-60 seq1421 215 6e-51 >seq6928 Length=2931 Score = 268 bits (296), Expect = 1e-66 Identities = 766/1151 (67%), Gaps = 44/1151 (4%) Strand=Plus/Plus Query 53522 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 53581 || || || || |||||||||||||| ||||| || ||||||||||| ||||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 53582 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATT 53641 | |||||| | ||| ||||| | ||| |||| ||||||||||| |||||| | |||| Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 53642 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT------CCATCTATTACAAAC 53695 ||| |||| | | || | ||||| ||| | | | ||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 53696 ATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 53755 | || | |||||| ||||||| || ||||| |||| || | | | | || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 | ||| ||||| || ||||| | ||| |||||||||| |||| ||| || |||| Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 | || || | ||| || || || ||| | || || |||||||| |||| ||||||| Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 53876 ATCGCTTTCCAGACGACA-CGAGCCTTTATTATAGA-TTTGTATCTCTT--TTCTCTTTC 53931 || |||||| | || | |||| | || || ||| || ||||| |||||||| Sbjct 1502 ATTTGACTCCAGA-GCCATCTTGCCT---TAATGGACTTTCTACCTCTTCCATCTCTTTC 1557 Query 53932 GTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 53991 ||| ||| | ||||||||| | |||||| ||| ||| || || ||||| Sbjct 1558 ATATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTC 1617 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATC 54048 | |||||||||| | ||| ||| |||| |||| |||| |||||| || ||||| Sbjct 1618 GTTGGGACACATCAGGGTCCAGTCT---TCATTCTTCTCGACTCTTTTCATGAAAAGATC 1674 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 || |||||||| || ||| |||||||||| ||| | |||||| || || |||||| Sbjct 1675 TGGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTT 1734 Query 54109 TTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 | | || | |||||| | |||| ||||| | ||||| || |||| || | | | Sbjct 1735 TCTCAGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACG 1793 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 |||| | ||| || || ||||| | ||||| || |||| |||| | || | | Sbjct 1794 CTCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCTTAA 1853 Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCA 54286 ||| ||||| | |||||| || ||||| || || ||| || | || | ||| Sbjct 1854 GCATGGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGC-GGCT 1912 Query 54287 CGAATATTACTAAT--TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 | || | || || || | ||| || || || || || ||||| | || ||| Sbjct 1913 CTGATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGC-AATC 1969 Query 54345 -GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AA 54400 || | || ||| |||| || || || ||| ||| |||| ||||| |||| || Sbjct 1970 TACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAA 2029 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 | || ||| || | ||| || | || || || ||||||| ||||| || Sbjct 2030 GAACT---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTG 2086 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATG 54519 ||||| || | | |||| ||| ||||||| ||||| || | ||| | ||| || Sbjct 2087 AACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TG 2145 Query 54520 AATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 ||| || |||| ||| | ||| | |||||| | ||||||||||| ||||||| | Sbjct 2146 AATACCAATACT--GACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCC 2202 Query 54578 AT-TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 || ||||| | || | | ||||||| ||| | || ||||| || | ||| |||| Sbjct 2203 ATCTTTCAAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTAGTTGTAGTC 2262 Query 54637 TCGTTCGTAAA 54647 || ||||||| Sbjct 2263 TCTATCGTAAA 2273 >seq14392 Length=2979 Score = 246 bits (272), Expect = 4e-60 Identities = 748/1135 (66%), Gaps = 32/1135 (3%) Strand=Plus/Plus Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 ||||| || |||| || || || | |||| |||||| ||||| || ||||| ||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 53570 TTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 |||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 53629 GTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTAT 53688 ||||| ||| | | || | ||||| | | ||||| ||||| ||| Sbjct 1229 ATTTCTAGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAACACTCCAT-TAT 1287 Query 53689 TA-CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 || || | || |||| || || || || || ||||| ||||| |||| || | Sbjct 1288 TAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAG 1347 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 |||| || || || || |||||| || ||| ||||| || | ||||| ||||| Sbjct 1348 TGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGAT 1407 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | || ||||| ||||| ||||| || | || ||||| |||||||| | Sbjct 1408 TGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAAC 1467 Query 53868 ATTCTATAATCGCTTTCCAGACGA-CACGAGCCTTTATTATAGATTTGTATCTCTT--TT 53924 ||| ||||| | | ||| | || | || ||||| | ||| | | || Sbjct 1468 TTTCAATAATAGTCTCCCAAAGTTTCATG-GCTTTTATGGTC--TTTCGCCCAATACCTT 1524 Query 53925 CTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||||| ||| |||||| | | ||| || | || || | |||| | | ||| Sbjct 1525 AGCTTTCATATTTAGTGTAAAGAGC--TTCGAAGGCATCACCATAGACATCATAGAGTCC 1582 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 | ||||| || || | | | ||| || |||| ||| | |||| |||||||| Sbjct 1583 CTTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAA 1642 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 ||||| || |||||||| || ||| || |||||||| | ||| | ||| || || || Sbjct 1643 TAGATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGT 1701 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||||||||| || | ||||| | | || ||| | ||||| ||||| | || || | Sbjct 1702 GATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAG 1761 Query 54162 TCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTAT 54215 | ||| || || | ||||| || || || | ||||||||| || | || Sbjct 1762 CGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCAT 1815 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | | ||||| | ||| || | || ||||||||| ||||| || || |||||||| Sbjct 1816 TGAATACTCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGC 1875 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 | ||| | || | ||||||| || | || || | || || || | || ||||| | Sbjct 1876 TGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAA 1935 Query 54336 ATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 | ||| ||| |||| ||||||||||| || | || ||||||| |||| | | Sbjct 1936 --GAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAA 1993 Query 54394 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 54453 || |||||||| ||||| | | || || ||||| |||| ||||| | || Sbjct 1994 TAAGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGC 2053 Query 54454 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCA 54513 ||| ||||||||||| ||| | || || || ||||| ||||| | || ||||| Sbjct 2054 GTGGGTAAACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTTC 2113 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||| || || |||| ||| | ||||| ||| ||||| |||||||||||||||||| Sbjct 2114 CTTATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGGA 2173 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| | || ||||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2174 GTTGACCTTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq1421 Length=1529 Score = 215 bits (238), Expect = 6e-51 Identities = 596/908 (66%), Gaps = 12/908 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| || || || | || ||||| || || ||||| || |||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| | || ||||||| ||| | |||| | || || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | |||||| || |||||| || || |||| | || | ||||| || || || Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 | |||||| || | | | | | |||||| |||| || | || |||| ||| || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAAT---- 1089 Query 24084 GATCTTACTGTTTCT-TCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACATG 24138 ||||| | | |||| ||| | || | | | | | ||| || | || | ||| | Sbjct 1088 GATCTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 |||| || ||| | ||| || |||||| || | || || || || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 |||| || ||||| || || ||||| || || || || || ||||||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACT 24318 | || |||| || || |||| || ||||| | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 | ||||| || ||||| || | ||| || || | | | || || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 | | |||||| | | || ||| | |||||||| | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | |||||||| || ||| | |||||||||||||||||||| || | || ||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | | || |||| || |||| || ||||| || || |||||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATA 24617 | | || ||||| || || | | | |||| || ||| ||| | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTTTAACA 551 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 ||| | | | ||| | ||| || |||||| |||| |||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGG 24737 |||||||| |||| ||||| ||||| || || |||||||| || || || | | | | Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTTCTCTTCCAAT 431 Query 24738 ATTGGTTC 24745 | |||||| Sbjct 430 AGTGGTTC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593562905637840