Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6006 116 3e-21 seq16706 107 2e-18 >seq6006 Length=2920 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 28941 TTTATAAGTAA-TAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 28999 ||||| | ||| ||| ||||||| | |||||| |||| || |||||||| || || || Sbjct 2837 TTTATTATTAAATAGAAGAAAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTAT 2778 Query 29000 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAA 29059 ||| ||| || ||| | || || | | | ||||| || ||| || || Sbjct 2777 TACTCTCGATGTCGAGCCCTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAA 2718 Query 29060 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTC 29119 ||||||| | ||| |||||||||||||| |||||||| || || | ||||||| Sbjct 2717 AGAAGGTATCCCCCCCGATCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGG 2658 Query 29120 CAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 | ||| || | |||||||| || || || ||||| ||||||||| |||| ||| || | Sbjct 2657 AAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACT 2598 Query 29180 ACGAGGAGG 29188 ||||||| Sbjct 2597 TAGAGGAGG 2589 >seq16706 Length=515 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || || || |||||| | || ||||||||||||||||||||||| Sbjct 312 AAGCAAAGA-TTCAGGACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCTTTGCT 254 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||||| |||||| | |||| | | || ||||| ||||||||||| ||||| Sbjct 253 GGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAACATTCAGAAGGAGTCTACC 194 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| |||| || || | ||||||| Sbjct 193 CTTCACTTGGTCTTGAGACTCAGAGGAGG 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428224373362865