Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1421 129 6e-25 seq6006 91.5 2e-13 seq16706 89.7 5e-13 >seq1421 Length=1529 Score = 129 bits (142), Expect = 6e-25 Identities = 333/501 (66%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||||| | | |||||||||||| | || |||||||| ||||| || ||||||||| Sbjct 558 GACTGGGAGAGACTCAACGACAACGAGAGACACTTCATCAAACACGTTCTCGCCTTTTTC 617 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGCA 116829 || || ||||| || || || ||||| || | | | | ||| || | | | | || Sbjct 618 GCTGCTTCTGACGGTATTGTAAATGAGAACCTAGCCTAAAGATTCTGCACTGAAATT-CA 676 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 ||| | || || | || |||||||| || |||| ||||| ||| | ||||| || Sbjct 677 GGTTCCAGAAGCTAGATGTTTCTACGGATTCTAGATGATGATGGAAAACATCCACTCTGA 736 Query 116890 AATGTATTCGACCCTCATCGACACGTAC----GTG-CGCTCTTCGGAGGAGAAGCTCCGT 116944 || || || || || || || | ||| ||||| | | |||| | Sbjct 737 AACCTACTCCCTTCTAATTGATACTTTGATTAGTGACGCTCAA-GAAAAAGAATAT---- 791 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || ||| || | | || || |||| | ||||| || ||||| || | Sbjct 792 TTATTCAAAGCCGTCTAAAATATCCCAGTTGTCACTAAAAAGGCAGAATGGGCATTGAGA 851 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| | | | || | ||||| || | || || || ||||| | || ||| Sbjct 852 TGGATTGGTGAAACAG---CTAGCTTCGCTGAAAGGCTAGTTGCTTTCGCTTCAGTTGAG 908 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | |||||||| ||| |||| | || || |||||||||||||| || |||||| Sbjct 909 GGTATATTCTTTTCTGGCTCTTTCTGTTCAATTTTCTGGCTCAAGAAACGTGGACTCATG 968 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || || ||| || ||||||||||| || || || ||| |||| ||||| Sbjct 969 CCAGGACTTACCTTCTCTAATGAGCTCATCTCTAGAGATGAAGGTATGCACACTGACTTC 1028 Query 117185 GCCTGTTTGCTGTTCAAGCAT 117205 || ||| | | | ||||||| Sbjct 1029 GCTTGTCTCATTTACAAGCAT 1049 >seq6006 Length=2920 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||| | |||||||| || || | ||||| || || || || |||| ||||| Sbjct 2820 GAAAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGC 2761 Query 40745 CCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || | || | | | | ||||| | |||| || |||| |||||||| || |||||| | Sbjct 2760 CCTCTGATACCATCGAAAACGTT-AAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCC 2702 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || ||| ||||||||| || || || || |||| |||| | ||| | || Sbjct 2701 GATCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGAT 2642 Query 40864 TACAACATCCAGAAGGA 40880 ||||||||||| || || Sbjct 2641 TACAACATCCAAAAAGA 2625 >seq16706 Length=515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||| || | ||||| || |||| | Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGA-GCCATC 333 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||| | ||| |||| ||||| || || ||||| | || | Sbjct 332 TGACACAATTGAAAACG-TCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATC 274 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| || || ||||| || || || | | || || ||||||| Sbjct 273 AACAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACA 214 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||| | || || || Sbjct 213 ACATTCAGAAGGAGTCTACCCTTCA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515081488348080