Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7827 138 2e-27 seq19055 122 1e-22 seq9347 107 3e-18 seq9461 105 1e-17 seq16706 104 4e-17 seq6006 98.7 1e-15 >seq7827 Length=2313 Score = 138 bits (152), Expect = 2e-27 Identities = 394/600 (66%), Gaps = 8/600 (1%) Strand=Plus/Plus Query 205356 TTCTAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATT 205415 || ||||| || ||||||| | || |||||| || | ||| |||| |||| | Sbjct 751 TTTTAATTATTCTTTTAATGGCTCAACATGATTCTTGTAAACATGAGCATCTCCAAGAAC 810 Query 205416 ATGAATAAATTCATATGGTTTTAAATTAGTTAAAT-GTGCAATCATATAAGTCAATAAAC 205474 ||| | ||| ||| | | |||| | | | | | |||| |||| |||| | | | Sbjct 811 ATGTACAAACTCACCTC-TCTTAAGTCCGCAGACTTGAGCAAGCATACAAGTAAGGAGAG 869 Query 205475 TATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTT 205534 ||||||||||| ||||| |||||||||| |||||| || ||| ||||||||||||| Sbjct 870 AATAACTAGCAATGTTAAAGGGTACACCTAGACCCATGTCGCATGACCTTTGATACATTT 929 Query 205535 GACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTA 205594 | |||| || | || || | | | |||| |||| | ||| ||| |||||||| | Sbjct 930 GGCATGATAGCTTTTGATCAGCACTCACATAGAATTAGGCCAAAATATGGCAAGGTGGAA 989 Query 205595 TAACCATATTTTCAACATCTATAGGATTCCAGG--CTGTTAA-TATTATATTTCTAGATT 205651 |||| || | | | || || ||||| | || ||| ||| | | || | Sbjct 990 GGGCCATTTTGTTTAAAGCTGCGGGGTTCCAAGCACTCATAACAATTCTCCTGCTGG--- 1046 Query 205652 CAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTAT 205711 ||| ||||||||||||| |||||||| | | | ||||| ||||| | || || | Sbjct 1047 TAGGATTATTTTTTATTTGATTTATAACGTCAGCAAGCTGATCGAATCCCTAGTTGGTGT 1106 Query 205712 AATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | | || ||| | || | ||| |||||||| | |||||| || ||||| || | Sbjct 1107 AGTCATCATGCATGGTAGAGTAATCAGCCCCAAAATGTCTCCATTGGAAGCCATAGACAG 1166 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatc 205831 | ||||| || | ||||| ||| || || | |||| | | | | | | | ||| Sbjct 1167 GGCCTAAGTCCCATTCTTCTCTTTCTTTGAGACCAATACTATCAAGAAACTGTCTTGAAG 1226 Query 205832 cattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCAG 205891 ||||| |||||||||| | ||| |||| | ||| || | ||| || ||| Sbjct 1227 CATTTCCATCCCAAATTTTAATTTTCTTATCGCTAAGATGTTTAGCATTGGTGTCTCCTT 1286 Query 205892 ATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATA 205951 || ||||| | || || || ||| ||||||||| || | |||||||||| || Sbjct 1287 TAATGAACCAAATCAACTCCTCGGCAACTCCTCTCCAGAAGACATCCTTTGTTGTAAGTA 1346 >seq19055 Length=771 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| |||| |||||||| || ||| | || | ||| || || || ||| ||| Sbjct 635 AAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCAGACACCATTGAAAAT 576 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | || || || |||||||| |||||||| || || |||||||| || |||||||| Sbjct 575 GTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAGACTTATTTTC 516 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||| | ||||| | |||| ||| ||| ||||| |||||||||||||| Sbjct 515 GCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAACATTCAAAAAGAATCC 456 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | || ||||| ||| | | |||| ||||| Sbjct 455 ACTCTCCACTTGGTCTTAAGACTCAGAGGAGGTAT 421 >seq9347 Length=3226 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 ||| ||||| |||||||||| ||||||||||| ||||| || || ||||| || ||| || Sbjct 2173 ATTTAAGATTAAGAAGGTATTCCACCTGATCAGCAAAGACTAATATTTGCTGGTAAATAA 2232 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 ||||||| || || ||| || || ||||| ||| ||| |||||| | |||||| Sbjct 2233 CTAGAGGAAGGTAGATGCCTAGCTGACTACAATATCTAAAGAGAGTCAACTCTCCATTTG 2292 Query 124746 GTTTTACGTTTACGAGGTGGTATTAAA 124772 |||||| | || |||| || || ||| Sbjct 2293 GTTTTAAGACTAAGAGGAGGAATGAAA 2319 >seq9461 Length=3094 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 124543 AAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATA 124602 |||||| | | || ||| |||| || |||||| | |||||| | | || |||| | Sbjct 936 AAATATATGTCAAAACATTAACTGGAAAAACTGTCACTATATACTCCTACCCAGATGAAA 877 Query 124603 CAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAA 124662 |||| | ||||| | || || |||||||| ||||| || || || ||||| | | Sbjct 876 CAATAGAGGAAATAAAAGAAAAGATACAAGATAAGGAAGGGATTCCTCCAGATCAGTAGA 817 Query 124663 GGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTC 124722 | | |||||||| || | |||| || ||||||| || ||| ||||||||| |||| Sbjct 816 GAATAATTTTTGCTGGGATTTAATTGGAAAATAGTCGTACTTTATCAGATTATAACATTC 757 Query 124723 AAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||| ||||| ||||| || || Sbjct 756 AAAAAGAAAGTACTTTACATTTAGTATT 729 >seq16706 Length=515 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || | Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCT 332 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| || ||||| || || |||||||| ||||| |||||| Sbjct 331 GACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCAA 272 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| ||||| || |||||| | || ||| | |||| | ||| || || Sbjct 271 CAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAAC 212 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || || || || | || ||||| || Sbjct 211 ATTCAGAAGGAGTCTACCCTTCACTTGGTCTT 180 >seq6006 Length=2920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || || ||||||||||| || || ||||| ||||| Sbjct 2731 AAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTCATCTTTGCTGGAAAG 2672 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 2671 TAGTTGGAAGACGGAAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCAC 2612 Query 124743 TTGGTTTTA 124751 ||||| ||| Sbjct 2611 TTGGTCTTA 2603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755254076054400