Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9461 116 6e-21 seq9347 100 4e-16 seq6006 98.7 1e-15 seq16706 95.1 2e-14 seq509 95.1 2e-14 >seq9461 Length=3094 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| ||||| |||||||||||| |||||| || ||||||||||| Sbjct 714 CCTCCTCTAAGTCTCAATACTAAATGTAAAGTACTTTCTTTTTGAATGTTATAATCTGAT 773 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | |||| || |||| | ||||||||||| | ||| | |||||| |||||| Sbjct 774 AAAGTACGACTATTTTCCAATTAAATCCCAGCAAAAATTATTCTCTACTGATCTGGAGGA 833 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 834 ATCCCTTCCTTATCTTG 850 >seq9347 Length=3226 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||||||| |||||||| | ||| || ||| | | ||||| || || | Sbjct 2314 TTCCTCCTCTTAGTCTTAAAACCAAATGGAGAGTTGACTCTCTTTAGATATTGTAGTCAG 2255 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || ||| | || |||| || ||| |||||||| || | |||||||||||| || | Sbjct 2254 CTAGGCATCTACCTTCCTCTAGTTATTTACCAGCAAATATTAGTCTTTGCTGATCAGGTG 2195 Query 146169 GAATTCCTTCTTTATCTT 146186 |||| ||||||| ||||| Sbjct 2194 GAATACCTTCTTAATCTT 2177 >seq6006 Length=2920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||||||||| ||||| || | ||| |||||||| || || ||||| || Sbjct 2589 CCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 2648 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || || | ||||||||||| || | |||||| ||||| || || Sbjct 2649 AAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGG 2708 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 2709 ATACCTTCTTTGTCTTG 2725 >seq16706 Length=515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| || ||||| || | ||||| || || || || || |||||| Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||| |||||||| || | |||||| ||||| || || Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 285 ATACCTTCCTTGTCCTG 301 >seq509 Length=667 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 10387 CACATGATAAAAAATTAATAAAAACTG--ATTTAATTATAGAAATTCCTAAAGGATGTTA 10444 ||||||| ||||||||||| |||| ||| | | || ||| || | ||| || Sbjct 441 CACATGAGAAAAAATTAATCTCTACTGGGATTGCAATGTA--AATACCAATAGGCAACTA 384 Query 10445 TGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGG 10504 | ||| | ||||| ||||| | ||||| ||| || ||||||||| |||||||||| Sbjct 383 CGGCAGAGTTGCTCCAAGATCAGGATTAGCAGCAAAGAATTTTATTGATGTTGGAGCTGG 324 Query 10505 AGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAA 10552 ||||||||||| |||||| |||||| | | |||| || ||||||| Sbjct 323 AGTAATTGACGCAGATTACAGAGGAGAACTTAAAGTATTACTATTTAA 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743327664687360