Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1421 152 5e-32 >seq1421 Length=1529 Score = 152 bits (168), Expect = 5e-32 Identities = 559/866 (65%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 15937 TGACATT----TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTA 15992 ||||||| ||||| || || | |||||||| || ||||| |||||||| || || Sbjct 1335 TGACATTAGCCTTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTA 1276 Query 15993 ATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAAC--AATAGTATTTATCGCA-TC 16049 |||| || | ||||| | ||||| ||||||| ||| |||||||||| | | | || Sbjct 1275 ATGAGATCATGTCCATCCATTCAAATGGATTTTC--AACTTAATAGTATTT-TGGAACTC 1219 Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 | | | || | | |||||| || ||||| || ||||| |||| | | ||| Sbjct 1218 CTAGAGCGAAGAGAAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGT 1159 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || || | | ||| || | || || | | ||| | ||| || | || | Sbjct 1158 TCATACCAATGAGCTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAG 1099 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT---AAG-TGTTTA 16225 | | | || || || | | | || || |||| |||| | ||| || || Sbjct 1098 CGTTTGTAATGATCTCAAGGATT-CTCTCATT---GGAGATTTTATTGTTAAGATGCTTG 1043 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | || | |||||| || ||| |||| ||||| || ||| || | ||| || || Sbjct 1042 TAAATGAGACAAGCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAG 983 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || ||||| |||||||| ||||| ||||| || | ||| || || | || || ||| Sbjct 982 AAGGTAAGTCCTGGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCA 923 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 |||||||||||||| ||||||| || || ||||| | | ||| || | | || Sbjct 922 GAAAAGAATATACCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTT 863 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || | |||||| | ||||| | ||| |||| | ||| || || | Sbjct 862 TCAC---CAATCCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAG 806 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 | || || |||||||| | |||||||| || ||| ||||||| ||||| | Sbjct 805 ACGGCTTTGAATAAATATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGG 746 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 || |||| || || || || ||||| |||| || || || || ||||||||| Sbjct 745 GAGTAGGTTTCAGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCT 686 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | | || | ||||| | | || |||| |||| ||| || || || || || || Sbjct 685 TCTGGAACCTGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCA 626 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||| || ||||| || || | |||||| || || | | | ||||| || ||| | Sbjct 625 GAAGCAGCGAAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTGAGTCTC 566 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| || |||| | | | ||||| || ||| ||||| || | || | Sbjct 565 TCCCAGTCTTTAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATT 506 Query 16766 GCCTTTTTATACATTTTCCATATGTC 16791 | ||| ||||||||||| || || Sbjct 505 TAATCTTTGTACATTTTCCAGATATC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462388376323800