Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6928 116 8e-21 >seq6928 Length=2931 Score = 116 bits (128), Expect = 8e-21 Identities = 257/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||||||| ||||| |||| ||| |||| | | | ||||| | ||| || | |||| Sbjct 2253 TACGATTACTTTGGATTCAGAACATTGGAAAGAGCTTATCTTTTGAAAGATGGAGCCAAG 2194 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| | ||| || | | |||||| | ||| |||| | | || ||||||||||| || Sbjct 2193 ATCATTGAAAGACCTTAACACATGCTTATGAGAGTCAGTATTGGTATTCACAAGGAAGAT 2134 Query 248938 ATAGAG--AGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 | ||| ||| | ||||||| ||| |||||| || ||| | ||||| |||| Sbjct 2133 CTCGAGTCAGCAT--TCGAGACCTACGATCTTATGAGTCAATTGTGGTTCACACACGCCA 2076 Query 248996 CACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTT 249054 | || || | |||||| | ||||| | ||| | ||| |||| || ||||| ||| || Sbjct 2075 CTCCTACTTTGTTCAACTCAGGTACTCCAAAACCA-CAGATGAGTTCTTGCTT-CTTATT 2018 Query 249055 G-CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGAT 249113 ||||| | || || || | || || || | ||| || || || ||| || || Sbjct 2017 AACCATGAAGGAGGATTCAATTGATGGAATCTTTGAAACACTCAAGTAGATTGCTGTCAT 1958 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 || || || || || |||||| |||| || || ||||| |||| | ||| || Sbjct 1957 CTCAAAGGCAGCTGGAGGTATCGGTGTCTCTGTATCAGACATCAGAGCCGCAGATTCATA 1898 Query 249174 CATCAAAGGTACAAATGG 249191 ||||| |||||||||||| Sbjct 1897 CATCAGAGGTACAAATGG 1880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073472220554944