Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq10702 98.7 1e-15 seq4620 98.7 1e-15 >seq10702 Length=9761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 73929 AATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCT 73988 |||||||||||| || | | || ||| | |||| | | |||| || ||| || |||||| Sbjct 4755 AATGGAGATATAGTATTATTTAACAGATAGCCTAGTCTTCATAGAGTATCTATTATGGCT 4814 Query 73989 CTTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAA 74045 | | ||| || | ||||| | || ||| ||| ||||||| || || ||| Sbjct 4815 CATAGAGCTAGAGTTATGCCTTCAAGAACACTTAGATTTAATGAATGTGTTTGTACT--- 4871 Query 74046 CCATATAATGCAGATTTTGATGGAGATGAAATGAAT 74081 ||||||||||||||||||||||| |||||||||||| Sbjct 4872 CCATATAATGCAGATTTTGATGGTGATGAAATGAAT 4907 >seq4620 Length=3684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 188923 CAATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAGTGGT 188982 |||||| ||||||||||||| | ||||||||| ||||| ||| ||| || | | ||| Sbjct 3369 CAATCTCTTTCCATTTCTCCAAGTCTTAAACCACCTTCTCTTGATCTACCTTCTGTAGGT 3310 Query 188983 TGCCTAGTAATTGCATGTCGTTTTTGGTTTGTACTTGCTCTTGAAAATATTTTATCTGAT 189042 || || |||| | | | ||||||| |||||||||||| || |||||| | Sbjct 3309 TGTCTTGTAAGTACT----GATTTTGGTCCT--CTTGCTCTTGAATGCATCTTATCTTAG 3256 Query 189043 ACCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAA 189083 ||||||||| | ||||| || ||||| | |||||| |||| Sbjct 3255 ACCATGTGCTTTAATCTCTGATAATAAATAGGTCCAGAGAA 3215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679632694108560