Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1421 197 1e-45 seq19055 125 6e-24 seq16706 98.7 9e-16 seq6006 95.1 1e-14 >seq1421 Length=1529 Score = 197 bits (218), Expect = 1e-45 Identities = 639/974 (66%), Gaps = 35/974 (4%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||||| ||| ||||||| || |||||||| || || || || ||||| || Sbjct 423 GAACCACTATTGGAAGAGAACCCTAACAGATTTGTGATCTTGCCAATCAAATATAATGAT 482 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||||| ||||||||| | | ||| | || ||||| || ||| | || || Sbjct 483 ATCTGGAAAATGTACAAAGATTAAATGGCAGCATTCTGGACATCAGAGGAAATCGATCTT 542 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 | | ||| | | || ||||| ||||| || |||||| | || || |||||| Sbjct 543 GCCACAGATGTTAAAGACTGGGAGAGACTCAACGACAACGAGAGACACTTCATCAAACAC 602 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || |||||||| || || || |||||||| || ||||| | | | ||||||| Sbjct 603 GTTCTCGCCTTTTTCGCTGCTTCTGACGGTATTGTAAATGAGAACCTAGCCTAAAGATTC 662 Query 57750 T-CACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808 | ||| ||| | || || | || || ||||| || |||||||| | || || || Sbjct 663 TGCACT-GAAATTCAGGTTCCAGAAGCTAGATGTTTCTACGGATTCTAGATGATGATGGA 721 Query 57809 AAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGA 57868 |||| | || || |||| || || || || || ||||| | | | ||| | || Sbjct 722 AAACATCCACTCTGAAACCTACTCCCTTCTAATTGATACTTTGATTAGTGACGCTCAAGA 781 Query 57869 GAAACGTAGACTG-TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGT 57927 ||| | | | | ||||| || || ||| || || | || | || |||||||| | Sbjct 782 AAAA-GAATATTTATTCAAAGCCGTCTAAAATATCCCAGTTGTCACTAAAAAGGCAGAAT 840 Query 57928 GGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCG 57987 || || | | |||||| | | || || | ||||| || |||||| | || |||| Sbjct 841 GGGCATTGAGATGGATTG---GTGAAACAGCTAGCTTCGCTGAAAGGCTAGTTGCTTTCG 897 Query 57988 CCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCG-GCAATATTTTGGATGAAGAAA 58046 | | || || |||||||||||||| ||| |||| | |||| || ||| | |||||| Sbjct 898 CTTCAGTTGAGGGTATATTCTTTTCTGGC-TCTTTCTGTTCAATTTTCTGGCTCAAGAAA 956 Query 58047 CGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTC 58106 || || || ||||| || || || || || ||| | || || | || || ||| | Sbjct 957 CGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTCTAGAGATGAAGGTATG 1016 Query 58107 CATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA----CCGACGCGGGA 58162 || ||||| || || || || || ||| || || ||||||| || | | | || Sbjct 1017 CACACTGACTTCGCTTGTCTCATTTACAAGCATCTTAACAATAAAATCTCCAATGAGAGA 1076 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 ||| | || || || || | || || | |||||| || ||||| | ||| | Sbjct 1077 ----ATCCTTGAGATCATTACAAACGCTGTAACCATCGAACTGGAATTTGTGAGCGAGTC 1132 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 ||||| || | | | ||||||||| | | ||| |||||||| |||||| Sbjct 1133 ACTACCAGTTGAGCTCATTGGTATGAACTCAAAACTCATGAGCCAGTACATTATGTTTGT 1192 Query 58283 TGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTAC-AACACG--AAAAATCC 58339 || || |||||| | ||| || | |||| | | ||| | | | ||||||| Sbjct 1193 AGCTGATAGACTTCTCTTCG--CT-CTAGGAGTTCCAAAATACTATTAAGTTGAAAATCC 1249 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGT 58399 ||||| | ||| | ||||||| | ||||| |||||||| ||||| || | ||| Sbjct 1250 ATTTGAATGGATGGACATGATCTCATTAACTGGCAAAACAAACTTCTTCGAGAAGAGAGT 1309 Query 58400 TAGCGAATATCAAAAATACGGCGTGATG---AGCGGTAACAAGTTGGAGGACGATATTTT 58456 | || || ||||| ||| | ||| ||| ||| | ||||||| | || || Sbjct 1310 AGGAGAGTACCAAAA----GGC-TAATGTCAAGC--AAACTA--AGGAGGACAAAATCTT 1360 Query 58457 CACTTTGGATGCTG 58470 |||||||||||||| Sbjct 1361 CACTTTGGATGCTG 1374 >seq19055 Length=771 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || || || || ||||| ||||||||||||| || Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCT 363 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | |||||| | || |||||||||||| | || ||||| || Sbjct 362 GACACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCAA 303 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||| | || || ||| || || | || ||||| ||| Sbjct 302 CAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTACAAC 243 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || || || | || |||||| | || ||||| Sbjct 242 ATTCAGAAGGAATCAACCCTCCACTTAGTCCTTAGATTAAGAGGCGG 196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| | || ||||| ||||| | || |||||||| ||||| | ||||| ||||| || Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || || |||||||| | || ||||| || Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 ||| | || || ||||| || || || | || ||| | || ||| || | |||| Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAG--ACTATA 473 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||||| ||||| || |||| | ||||| || || |||| Sbjct 472 ACATTCAAAAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGGTA 422 >seq16706 Length=515 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || || || | |||||||| || || Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCT 332 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||||| || ||| | |||||||||||| | || ||||| || Sbjct 331 GACACAATTGAAAACGTCAAAGCAAAGATTCA-GGACAAGGAAGGTATCCCACCCGATCA 273 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || || ||||| ||||| | ||||| | ||| | || || || Sbjct 272 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAA 213 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || || ||||| |||| | ||||| || || || Sbjct 212 CATTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 165 >seq6006 Length=2920 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||| | || ||||| |||||| |||| || || || || || |||| || || || Sbjct 2819 AAAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCC 2760 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||||| || || | || ||||| ||||| | || ||||| Sbjct 2759 CTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGA 2700 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | || || || ||||| || ||||||||||| | || || ||||| Sbjct 2699 TCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTA 2640 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||||||||| |||||||| |||| | ||||| || || ||| Sbjct 2639 CAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGGT 2588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445647252213360