Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1421 250 3e-61 seq14392 239 6e-58 seq6928 233 2e-56 >seq1421 Length=1529 Score = 250 bits (276), Expect = 3e-61 Identities = 593/890 (67%), Gaps = 12/890 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || || || | || ||||| || || ||||| || ||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| | ||||| ||||| ||| | || |||| || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | |||||| || || || || || |||| | || | ||||| || ||||| Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | |||||| || | | | | | |||||| |||| |||| ||| || ||||| || || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAATGAT- 1086 Query 33531 AATCTAACGGTTTCT-TCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAACATG 33585 || | || |||| ||| | || | | || | | ||| || | || | ||| | Sbjct 1085 ---CTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 |||| || ||||| ||| || |||||| || | || ||||| || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| || ||||| || || ||||| || || ||| ||| || || |||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33765 | || |||| ||| || |||| || || || | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | ||||| || ||||| || | ||| || || ||| | ||| || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | | |||||| | | || ||| ||||||| || | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | |||||||| || ||||| |||||||||||||||||||| || | || ||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 | || || |||| || |||| || ||||| || || || ||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATA 34064 | | || ||||| || || | | | |||| || ||| ||| | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTTTAACA 551 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 ||| | | | ||| | ||| || |||||| |||| |||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||||||| |||| ||||| |||||| || || |||||||| || || || Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTT 441 >seq14392 Length=2979 Score = 239 bits (264), Expect = 6e-58 Identities = 743/1133 (66%), Gaps = 28/1133 (2%) Strand=Plus/Plus Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 ||||| || |||| || || || | |||| |||||| ||||| || ||||| ||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 62808 TTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 |||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62926 |||||| ||| | | || | ||||| | | ||||| |||| ||| Sbjct 1229 ATTTCTAGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAACACTCCAT-TAT 1287 Query 62927 TA-CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 || || | || |||| | || || || || || || ||||| |||| || | Sbjct 1288 TAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAG 1347 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||| || || || || |||||| || ||| || || || | ||||| ||||| Sbjct 1348 TGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGAT 1407 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | || ||||| ||||| ||||| || | |||||||| |||||||| | | Sbjct 1408 TGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAAC 1467 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTT 63162 ||| ||||| | | ||| | | || | |||| ||| | || | | | || Sbjct 1468 TTTCAATAATAGTCTCCCAAA-GTTTCATGGCTTT--TATGGTCTTTCGCCCAATACCTT 1524 Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 ||||| ||| ||| || | |||||| | || || | |||| | | || Sbjct 1525 AGCTTTCATATTTAGTGTAAAGAGCTTCGAAGGCATCACCATAGACATCATAGAGTCCCT 1584 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 | ||||| || || | | | ||| || |||| ||| | |||| |||||||| | Sbjct 1585 TAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAATA 1644 Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||| || |||||||| || ||| || |||||||| | ||| | ||| || || || | Sbjct 1645 GATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGTGA 1703 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||||| || | ||||| | | || ||| | ||||| ||||| | || || || Sbjct 1704 TTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAGCG 1763 Query 63402 AT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTA 63455 | ||| || || | ||||| || || || | ||||||||| || | ||| Sbjct 1764 AATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATTG 1817 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 | ||||| | ||| || | || ||| || || ||||| ||||| |||||||| Sbjct 1818 AATACTCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGCTG 1877 Query 63516 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 ||| | || | ||||||| || | || || | ||| || || | || ||||| | Sbjct 1878 CCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAA-- 1935 Query 63576 GCGCATCGTT-TTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 | ||| ||| |||| || |||||||| || | || |||||| |||| | | || Sbjct 1936 GAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAATA 1995 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 |||||||| ||||| | || || || ||||| |||| ||||| | |||| Sbjct 1996 AGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGCGT 2055 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | ||||||||||| ||| | || || || ||||||||||| | || ||||| | Sbjct 2056 GGGTAAACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTTCCT 2115 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 ||| || || |||| ||| | ||||| ||| ||||| ||||||||||| || ||| || Sbjct 2116 TATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGGAGT 2175 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 | | || | ||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2176 TGACCTTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq6928 Length=2931 Score = 233 bits (258), Expect = 2e-56 Identities = 808/1228 (66%), Gaps = 52/1228 (4%) Strand=Plus/Plus Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG-TGCTTCCGGGCTATCAAATGGAT 62745 ||| || ||||||||||| || ||| || ||| ||||| || || ||||| | Sbjct 1069 ATAGATAGTTTCAAAGATTAACTCATTGAG-TCTCAATGCTTTAGGATCTTCGAATGG-T 1126 Query 62746 AATTTAAGAGAATA---AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | ||| ||| || || || || || |||||||||||||| ||||| || ||||||| Sbjct 1127 ATTTT--GAGCATTTGTAATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTAT 1184 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 |||| ||||||| || |||||| | ||| ||||| | ||| |||| |||||||||| Sbjct 1185 GTCTAAGATTAGAGTATTTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTAT 1244 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------C 62916 | || ||| | |||| ||| |||| | | || | ||||| || Sbjct 1245 TAAGGTTTTTTGTAATTCTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGG 1304 Query 62917 GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT 62976 | | ||| || || | || | ||||| ||||||| || || || |||| || | Sbjct 1305 TATCTTTTATGACGAATCTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGT 1364 Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036 | | | || | | ||| ||||| || ||||| | ||| || ||||||| | Sbjct 1365 CGGGACTGGTGTACTCCACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGT 1424 Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096 ||| ||| || |||| | || || | ||| || || || ||| | || || ||||||| Sbjct 1425 TTTATTGGTTTGACTTTCTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTT 1484 Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA-TTTGTA- 63154 | |||| |||||||| || |||||| || |||| | || || ||| || Sbjct 1485 CTATCTAAGATTCTACGATTTGACTCCAGAGCCATCTTGCCT---TAATGGACTTTCTAC 1541 Query 63155 -TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 ||| | |||||||| ||| ||| | ||| ||||| | |||||| ||| Sbjct 1542 CTCTTCCATCTCTTTCATATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTAC 1601 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63270 ||| | || ||||| | |||||||||| | ||| ||| |||| |||| |||| Sbjct 1602 TCAAACCTGGGCATTCGTTGGGACACATCAGGGTCCAGTCT---TCATTCTTCTCGACTC 1658 Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCT 63330 |||||| || ||||| || |||||||| || ||| |||||||| | ||| | ||||| Sbjct 1659 TTTTCATGAAAAGATCTGGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCT 1718 Query 63331 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCC 63389 | || || ||||||| | || | |||||| | |||| ||||| | ||||| || ||| Sbjct 1719 CCTTACCATGATTCTTTCTCAGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCC 1777 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 | || | || | |||| | ||| || || ||||| | ||||| || ||| Sbjct 1778 ACATAGACAGCAAACGCTCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTG 1837 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGAT 63508 | |||| | || | | ||| ||||| | ||| |||| |||| ||||| ||||| ||| Sbjct 1838 TCATTAAATACCTTAAGCATGGGAATTAAACCATTTGAATAT-CCATTTGTACCTCTGAT 1896 Query 63509 ATA-GCCTCCACTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTT 63565 || | || | ||| | || | || || || | ||| || || || || || Sbjct 1897 GTATGAATCTGC-GGCTCTGATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTT 1953 Query 63566 AGAGATTAATGCGCATC-GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 ||||| | || ||| || | || ||| |||| || || || ||| || ||| Sbjct 1954 TGAGATGACAGC-AATCTACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCA 2012 Query 63625 T-GTTAAGTAGAA--AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGG 63681 | ||||| |||| || | || ||| || | | ||| || | || || || | Sbjct 2013 TGGTTAATAAGAAGCAAGAACT---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAG 2069 Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741 |||||| ||||| || ||||| || | | |||| ||| ||||| | ||||| | Sbjct 2070 TAGGAGTGGCGTGTGTGAACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACT 2129 Query 63742 CTATATC-CCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 | | ||| | ||| ||||| || |||| ||| | ||| | |||||| | |||||||| Sbjct 2130 CGAGATCTTCCTTG-TGAATACCAATACT--GACTCTCATAAGCATGTGTTAAGGTCTTT 2186 Query 63799 CAACAATTTTGTTGTTTAT-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 ||| || ||| | || |||||| | || | | ||||||| ||| | || ||||| Sbjct 2187 CAATGATCTTG-GCTCCATCTTTCAAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAG 2245 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTAAA 63885 || | ||| |||||| ||||||| Sbjct 2246 TAATCGTAGTTGTAGTCTCTATCGTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629649257628240